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default out seq row length to 60
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clipcontext/cliplib.py

Lines changed: 2 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -503,8 +503,7 @@ def bed_extract_sequences_from_2bit(in_bed, out_fa, in_2bit,
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sequences in out_fa.
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convert_to_rna:
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If true, read in extracted sequences and convert to RNA. Output
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with row length = 50.
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If true, read in extracted sequences and convert to RNA.
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"""
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# Check for twoBitToFa.
@@ -521,8 +520,7 @@ def bed_extract_sequences_from_2bit(in_bed, out_fa, in_2bit,
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seqs_dic = read_fasta_into_dic(out_fa)
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# Output RNA sequences.
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fasta_output_dic(seqs_dic, out_fa,
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split=True,
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split_size=50)
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split=True)
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################################################################################

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