tcga_id <- "TCGA-HNSC"
query <- GDCquery(
project = tcga_id,
data.category = "Transcriptome Profiling",
data.type = "Gene Expression Quantification",
experimental.strategy = "RNA-Seq",
sample.type = c("Primary Tumor", "Metastatic", "Recurrent Tumor"),
access = "open", # files open source,
workflow.type = "STAR - Counts"
)
--------------------------------------
o GDCquery: Searching in GDC database
--------------------------------------
Genome of reference: hg38
Error in curl::curl_fetch_memory(url, handle = handle) :
SSL peer certificate or SSH remote key was not OK [api.gdc.cancer.gov]: SSL certificate problem: unable to get local issuer certificate