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johann-petrakjohann-petrak
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Bump minor version, update interaction library, add testing pipelines for keras.
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6 files changed

+593
-2
lines changed

6 files changed

+593
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‎.gitignore

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@@ -39,3 +39,8 @@ hs_err_*.log
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/tests/cl-ionosphere/model-costcla-external-rf/m2_01.npy
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/tests/cl-ionosphere/model-costcla-external-rf/model
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/tests/cl-ionosphere/model-keras-m1/dep.csv
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/tests/cl-ionosphere/model-keras-m1/indep.csv
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/tests/cl-ionosphere/model-keras-m1/kerasmodel.h5
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‎creole.xml

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@@ -1,7 +1,7 @@
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<!-- creole.xml for Learning_Framework -->
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<CREOLE-DIRECTORY
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ID="gate.LearningFramework"
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VERSION="3.5"
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VERSION="3.5.1"
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DESCRIPTION="Learning Framework"
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HELPURL="https://github.com/GateNLP/gateplugin-LearningFramework/wiki"
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>
@@ -10,5 +10,5 @@
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<IVY>build/ivy.xml</IVY>
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<JAR>lib-static/commons-cli-1.4-modified.jar</JAR>
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<JAR>lib-static/libsvm.jar</JAR>
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<JAR>lib-static/interaction-3.5.jar</JAR>
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<JAR>lib-static/interaction-3.5.1.jar</JAR>
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</CREOLE-DIRECTORY>

‎lib-static/interaction-3.5.jar renamed to ‎lib-static/interaction-3.5.1.jar

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‎tests/cl-ionosphere/apply-keras-external-m1.xgapp

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<gate.util.persistence.GateApplication>
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<urlList class="gate.util.persistence.CollectionPersistence">
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<localList>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$gatehome$plugins/ANNIE</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$relpath$../..</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$gatehome$plugins/Groovy</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$gatehome$plugins/Format_FastInfoset</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$gatehome$plugins/Tools</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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</localList>
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<collectionType>java.util.ArrayList</collectionType>
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</urlList>
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<application class="gate.util.persistence.ConditionalSerialAnalyserControllerPersistence">
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<corpus class="gate.util.persistence.CorpusPersistence">
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<docList>
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<gate.util.persistence.LRPersistence>
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<resourceType>gate.corpora.DocumentImpl</resourceType>
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<resourceName>ionosphere_gate.xml_00011</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>sourceUrl</string>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$relpath$ionosphere_gate.xml</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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</entry>
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<entry>
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<string>preserveOriginalContent</string>
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<boolean>false</boolean>
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</entry>
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<entry>
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<string>collectRepositioningInfo</string>
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<boolean>false</boolean>
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</entry>
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<entry>
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<string>markupAware</string>
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<boolean>true</boolean>
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</entry>
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<entry>
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<string>sourceUrlEndOffset</string>
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<null/>
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</entry>
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<entry>
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<string>stringContent</string>
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<string></string>
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</entry>
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<entry>
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<string>mimeType</string>
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<null/>
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</entry>
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<entry>
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<string>encoding</string>
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<string>UTF-8</string>
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</entry>
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<entry>
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<string>sourceUrlStartOffset</string>
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<null/>
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</entry>
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</localMap>
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</initParams>
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</gate.util.persistence.LRPersistence>
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</docList>
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<resourceType>gate.corpora.CorpusImpl</resourceType>
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<resourceName>Corpus for ionosphere_gate.xml_00011</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>documentsList</string>
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<null/>
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</entry>
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</localMap>
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</initParams>
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</corpus>
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<strategiesList class="gate.util.persistence.CollectionPersistence">
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<localList>
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<gate.util.persistence.AnalyserRunningStrategyPersistence>
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<runMode>1</runMode>
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<featureName></featureName>
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<featureValue></featureValue>
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<pr class="gate.util.persistence.PRPersistence">
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<runtimeParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>setsToKeep</string>
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<gate.util.persistence.CollectionPersistence>
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<localList>
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<string>Key</string>
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<null/>
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</localList>
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<collectionType>java.util.ArrayList</collectionType>
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</gate.util.persistence.CollectionPersistence>
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</entry>
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<entry>
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<string>keepOriginalMarkupsAS</string>
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<boolean>true</boolean>
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</entry>
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<entry>
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<string>corpus</string>
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<null/>
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</entry>
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<entry>
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<string>setsToRemove</string>
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<gate.util.persistence.CollectionPersistence>
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<localList>
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<string>LearningFramework</string>
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<string>LFOUT</string>
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</localList>
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<collectionType>java.util.ArrayList</collectionType>
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</gate.util.persistence.CollectionPersistence>
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</entry>
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<entry>
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<string>annotationTypes</string>
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<null/>
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</entry>
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<entry>
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<string>document</string>
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<null/>
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</entry>
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</localMap>
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</runtimeParams>
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<resourceType>gate.creole.annotdelete.AnnotationDeletePR</resourceType>
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<resourceName>Reset:LearningFramework</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</initParams>
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<features class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</features>
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</pr>
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</gate.util.persistence.AnalyserRunningStrategyPersistence>
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<gate.util.persistence.AnalyserRunningStrategyPersistence>
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<runMode>1</runMode>
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<featureName></featureName>
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<featureValue></featureValue>
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<pr class="gate.util.persistence.PRPersistence">
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<runtimeParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>tagASName</string>
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<string>Original markups</string>
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</entry>
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<entry>
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<string>textTagName</string>
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<string></string>
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</entry>
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<entry>
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<string>transferAllUnlessFound</string>
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<boolean>true</boolean>
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</entry>
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<entry>
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<string>document</string>
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<null/>
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</entry>
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<entry>
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<string>copyAnnotations</string>
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<boolean>true</boolean>
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</entry>
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<entry>
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<string>outputASName</string>
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<string>LearningFramework</string>
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</entry>
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<entry>
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<string>inputASName</string>
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<null/>
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</entry>
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<entry>
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<string>annotationTypes</string>
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<null/>
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</entry>
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</localMap>
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</runtimeParams>
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<resourceType>gate.creole.annotransfer.AnnotationSetTransfer</resourceType>
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<resourceName>CopyMentionsToLF</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</initParams>
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<features class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</features>
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</pr>
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</gate.util.persistence.AnalyserRunningStrategyPersistence>
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<gate.util.persistence.AnalyserRunningStrategyPersistence>
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<runMode>1</runMode>
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<featureName></featureName>
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<featureValue></featureValue>
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<pr class="gate.util.persistence.PRPersistence">
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<runtimeParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>corpus</string>
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<null/>
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</entry>
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<entry>
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<string>scriptParams</string>
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<gate.util.persistence.MapPersistence>
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</gate.util.persistence.MapPersistence>
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</entry>
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<entry>
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<string>outputASName</string>
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<null/>
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</entry>
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<entry>
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<string>inputASName</string>
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<null/>
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</entry>
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<entry>
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<string>document</string>
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<null/>
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</entry>
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</localMap>
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</runtimeParams>
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<resourceType>gate.groovy.ScriptPR</resourceType>
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<resourceName>deleteClass</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>encoding</string>
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<string>UTF-8</string>
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</entry>
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<entry>
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<string>scriptURL</string>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$relpath$deleteClass.groovy</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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</entry>
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</localMap>
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</initParams>
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<features class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</features>
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</pr>
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</gate.util.persistence.AnalyserRunningStrategyPersistence>
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<gate.util.persistence.AnalyserRunningStrategyPersistence>
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<runMode>1</runMode>
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<featureName></featureName>
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<featureValue></featureValue>
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<pr class="gate.util.persistence.LanguageAnalyserPersistence">
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<runtimeParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap>
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<entry>
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<string>targetFeature</string>
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<string>class</string>
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</entry>
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<entry>
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<string>dataDirectory</string>
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<gate.util.persistence.PersistenceManager-URLHolder>
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<urlString>$relpath$model-keras-m1</urlString>
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</gate.util.persistence.PersistenceManager-URLHolder>
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</entry>
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<entry>
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<string>confidenceThreshold</string>
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<double>0.0</double>
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</entry>
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<entry>
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<string>serverUrl</string>
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<null/>
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</entry>
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<entry>
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<string>instanceType</string>
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<string>Mention</string>
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</entry>
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<entry>
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<string>document</string>
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<null/>
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</entry>
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<entry>
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<string>corpus</string>
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<null/>
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</entry>
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<entry>
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<string>algorithmParameters</string>
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<string> </string>
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</entry>
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<entry>
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<string>outputASName</string>
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<string>LearningFramework</string>
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</entry>
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<entry>
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<string>inputASName</string>
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<string>LearningFramework</string>
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</entry>
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<entry>
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<string>sequenceSpan</string>
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<string></string>
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</entry>
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</localMap>
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</runtimeParams>
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<resourceType>gate.plugin.learningframework.LF_ApplyClassification</resourceType>
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<resourceName>LF_ApplyClassification</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</initParams>
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<features class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</features>
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</pr>
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</gate.util.persistence.AnalyserRunningStrategyPersistence>
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</localList>
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<collectionType>java.util.ArrayList</collectionType>
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</strategiesList>
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<prList class="gate.util.persistence.CollectionPersistence">
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<localList>
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<gate.util.persistence.PRPersistence reference="../../../strategiesList/localList/gate.util.persistence.AnalyserRunningStrategyPersistence/pr"/>
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<gate.util.persistence.PRPersistence reference="../../../strategiesList/localList/gate.util.persistence.AnalyserRunningStrategyPersistence[2]/pr"/>
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<gate.util.persistence.PRPersistence reference="../../../strategiesList/localList/gate.util.persistence.AnalyserRunningStrategyPersistence[3]/pr"/>
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<gate.util.persistence.LanguageAnalyserPersistence reference="../../../strategiesList/localList/gate.util.persistence.AnalyserRunningStrategyPersistence[4]/pr"/>
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</localList>
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<collectionType>java.util.ArrayList</collectionType>
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</prList>
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<resourceType>gate.creole.ConditionalSerialAnalyserController</resourceType>
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<resourceName>apply-keras-external-m1</resourceName>
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<initParams class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</initParams>
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<features class="gate.util.persistence.MapPersistence">
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<mapType>gate.util.SimpleFeatureMapImpl</mapType>
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<localMap/>
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</features>
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</application>
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</gate.util.persistence.GateApplication>

‎tests/cl-ionosphere/model-keras-m1/keras.yaml

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keraswrapper.home: ../../../../keras-wrapper

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