DeepLearningToolkit

The DeepLearningToolkit is a set of enviroments populated with several libraries related to deep learning and allow to run protocols how require deep learning tools. All of them are available for GPU or CPU only ( the installator 'll detect your configuraction) All the enviroments are:

• xmipp_DLTK_v0.3

• Protocols ussing it: screen_deeplearning, deep_denoising, resolution_deepres, screen_deepConsensus
• python=3.7
• scikit-image=0.14
• tensorflow=1.15
• keras=2.2
• scikit-learn=0.22
• pip
• numpy==1.21
• h5py==2.10.0

• xmipp_DLTK_v1.0

• Protocols ussing it: deep_misalingment_detection
• python=3.8
• tensorflow=2.7
• keras=2.7
• pip
• numpy==1.23

• xmipp_MicCleaner

• Protocols ussing it: deepMicrographScreen
• python=3.6
• micrograph-cleaner-em=0.35

• xmipp_deepEMhancer

• Protocols ussing it: protocol_deepEMhancer
• python=3.6
• deepemhancer=0.12
• numba=0.45

• xmipp_pyTorch

• Protocols ussing it: deepMicrographScreen
• python=3.6
• micrograph-cleaner-em=0.35