update readme

Author: ruiqi0130

.gitignore

@@ -40,6 +40,22 @@ devtools::install_github("KlugerLab/LocalizedMarkerDetector")
 library("LocalizedMarkerDetector")
 ```
 
+## Docker Installation
+
+Alternatively, we provide a Docker environment with LMD and all its dependencies pre-installed. The pre-built Docker image can be downloaded using:
+
+``` bash
+docker pull ruiqi0130/lmd-rstudio:lastest
+```
+
+and to run the docker container:
+
+``` bash
+docker run -it --rm --name lmd -p 8029:8787  -v /data/:/data/   docker.io/ruiqi0130/lmd-rstudio:latest
+```
+
+Here, change `/data:/data` to `<your_local_data_directory>:/data`. A rstudio will be on port 8029. 
+
 ## Example tutorial
 Please check [LMD tutorial](https://KlugerLab.github.io/LocalizedMarkerDetector/articles/).
 

README.Rmd

@@ -31,6 +31,25 @@ devtools::install_github("KlugerLab/LocalizedMarkerDetector")
 library("LocalizedMarkerDetector")
 ```
 
+## Docker Installation
+
+Alternatively, we provide a Docker environment with LMD and all its
+dependencies pre-installed. The pre-built Docker image can be downloaded
+using:
+
+``` bash
+docker pull ruiqi0130/lmd-rstudio:lastest
+```
+
+and to run the docker container:
+
+``` bash
+docker run -it --rm --name lmd -p 8029:8787  -v /data/:/data/   docker.io/ruiqi0130/lmd-rstudio:latest
+```
+
+Here, change `/data:/data` to `<your_local_data_directory>:/data`. A
+rstudio will be on port 8029.
+
 ## Example tutorial
 
 Please check [LMD

README.md

@@ -4,7 +4,7 @@ pkgdown_sha: ~
 articles:
   LMD_cross_comparison_demo: LMD_cross_comparison_demo.html
   LMD_demo: LMD_demo.html
-last_built: 2025-04-23T01:01Z
+last_built: 2025-04-29T01:16Z
 urls:
   reference: https://github.com/KlugerLab/LocalizedMarkerDetector/reference
   article: https://github.com/KlugerLab/LocalizedMarkerDetector/articles