Update the embedded Unimod 'brick' definitions to fix the mzid generation failure after updating Unimod.obo

Author: FarmGeek4Life

docs/Changelog.html

@@ -13,6 +13,13 @@ <h1 class="pagetitle">MS-GF+ ChangeLog</h1>
         <a href="index.html">MS-GF+ Documentation home</a>
     </p>
 
+    <p>
+      <b>v2020.03.14</b>
+    </p>
+    <ul>
+      <li>Update the embedded Unimod 'brick' definitions to fix the mzid generation failure after updating Unimod.obo</li>
+    </ul>
+
     <p>
       <b>v2020.03.12</b>
     </p>

src/main/java/edu/ucsd/msjava/msutil/Atom.java

@@ -69,6 +69,7 @@ public static Atom get(String code) {
                     new Atom("F", 18.99840322, 19, "Fluorine"),
                     new Atom("Na", 22.9897677, 23, "Sodium"),
                     new Atom("Mg", 23.9850423, 24, "Magnesium"),
+                    new Atom("Al", 26.9815386, 27, "Aluminium"),
                     new Atom("P", 30.973762, 31, "Phosphorus"),
                     new Atom("S", 31.9720707, 32, "Sulfur"),
                     new Atom("Cl", 34.96885272, 35, "Chlorine"),
@@ -85,10 +86,12 @@ public static Atom get(String code) {
                     new Atom("Br", 78.9183361, 79, "Bromine"),
                     new Atom("Se", 79.9165196, 80, "Selenium"),
                     new Atom("Mo", 97.9054073, 98, "Molybdenum"),
+                    new Atom("Ru", 101.9043485, 102, "Ruthenium"),
                     new Atom("Pd", 105.903478, 106, "Palladium"),
                     new Atom("Ag", 106.905092, 107, "Silver"),
                     new Atom("Cd", 113.903357, 114, "Cadmium"),
                     new Atom("I", 126.904473, 127, "Iodine"),
+                    new Atom("Pt", 194.964766, 195, "Platinum"),
                     new Atom("Au", 196.966543, 197, "Gold"),
                     new Atom("Hg", 201.970617, 202, "Mercury"),
                     // Unimod mod bricks, definitions from http://www.unimod.org/xml/unimod.xml

src/main/java/edu/ucsd/msjava/ui/MSGFPlus.java

@@ -22,8 +22,8 @@
 
 
 public class MSGFPlus {
-    public static final String VERSION = "Release (v2020.03.12)";
-    public static final String RELEASE_DATE = "12 March 2020";
+    public static final String VERSION = "Release (v2020.03.14)";
+    public static final String RELEASE_DATE = "14 March 2020";
 
     public static final String DECOY_DB_EXTENSION = ".revCat.fasta";
     public static final String DEFAULT_DECOY_PROTEIN_PREFIX = "XXX";