Merge pull request #290 from PaddlePaddle/helixdock

Merge pull request #288 from PaddlePaddle/helixdock

Author: Noisyntrain

README.md

@@ -19,6 +19,9 @@ English | [简体中文](README_cn.md)
 
 `2024.04.16` PaddleHelix released the technical report of HelixFold-Multimer, a protein complex structure prediction model which achieves remarkable success in antigen-antibody and peptide-protein structure prediction. Please refer to the [report](https://arxiv.org/abs/2404.10260v2) for more details. The online structure prediction services for general and antigen-antibody protein complex are now available at [link1](https://paddlehelix.baidu.com/app/drug/protein-complex/forecast) and [link2](https://paddlehelix.baidu.com/app/drug/KYKT/forecast) on the PaddleHelix platform respectively.
 
+`2023.10.09` The work of HelixFold-Single titled with "A method for multiple-sequence-alignment-free protein structure prediction using a protein language model" is accepted by Nature Machine Intelligence. Please refer to [paper](https://doi.org/10.1038/s42256-023-00721-6) for more details.
+
+
 `2022.12.08` Paper "HelixMO: Sample-Efficient Molecular Optimization in Scene-Sensitive Latent Space" is accepted by **BIBM 2022**. Please refere to [link1](https://www.computer.org/csdl/proceedings-article/bibm/2022/09995561/1JC23yWxizC) or [link2](https://aps.arxiv.org/abs/2112.00905) for more details. We also deployed the drug design service on the website [PaddleHelix](https://paddlehelix.baidu.com/app/drug/drugdesign/forecast).
 
 `2022.08.11` PaddleHelix released the codes of HelixGEM-2, a novel Molecular Property Prediction Network that models full-range many-body interactions. And it ranked 1st in the OGB [PCQM4Mv2](https://ogb.stanford.edu/docs/lsc/leaderboards/) leaderboard. Please refer to [paper](https://arxiv.org/abs/2208.05863) and [codes](./apps/pretrained_compound/ChemRL/GEM-2) for more details.

README_cn.md

@@ -16,6 +16,9 @@
 
 `2024.04.16` 螺旋桨团队发布了《HelixFold-Multimer技术报告》，它是一个蛋白质复合物结构预测模型，在抗原-抗体和肽-蛋白质结构预测方面取得了显著成功。更多详情请参考[报告](https://arxiv.org/abs/2404.10260v2)。螺旋桨平台上现已提供通用和抗原-抗体蛋白质复合物的在线结构预测服务，分别位于[链接1](https://paddlehelix.baidu.com/app/drug/protein-complex/forecast)和[链接2](https://paddlehelix.baidu.com/app/drug/KYKT/forecast)。
 
+
+`2023.10.9`，HelixFold-Single的研究工作《A method for multiple-sequence-alignment-free protein structure prediction using a protein language model》被《Nature Machine Intelligence》期刊接收，详见 [论文](https://doi.org/10.1038/s42256-023-00721-6)。
+
 `2022.12.08` 论文"HelixMO: Sample-Efficient Molecular Optimization in Scene-Sensitive Latent Space"被**BIBM 2022**接收。详情参见[链接1](https://www.computer.org/csdl/proceedings-article/bibm/2022/09995561/1JC23yWxizC)或[链接2](https://aps.arxiv.org/abs/2112.00905)去获得更多信息。也欢迎到我们的服务平台[PaddleHelix](https://paddlehelix.baidu.com/app/drug/drugdesign/forecast)试用药物设计服务.
 
 `2022.08.11` 螺旋桨团队开源了HelixGEM-2的代码, 它是一个全新的基于长程多体建模的小分子属性预测框架，并在OGB [PCQM4Mv2](https://ogb.stanford.edu/docs/lsc/leaderboards/) 排行榜取得第一的成绩。详情参见 [论文](https://arxiv.org/abs/2208.05863) 和 [代码](./apps/pretrained_compound/ChemRL/GEM-2)。

apps/molecular_docking/helixdock/README.md

@@ -9,6 +9,15 @@ HelixDock also demonstrates outstanding capabilities in cross-docking and struct
 ## Online Service
 For those who want to try out our model without any installation, we also provide an online interface [PaddleHelix HelixDock-forcast](https://paddlehelix.baidu.com/app/drug/helix-dock/forecast) through web service.
 
+## License
+This project is licensed under the [CC BY-NC License](https://creativecommons.org/licenses/by-nc/4.0/).
+
+Under this license, you are free to share, copy, distribute, and transmit the work, subject to the following restrictions:
+
+- Attribution (BY): You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
+- Non-Commercial (NC): You may not use the material for commercial purposes, but you are free to use it for academic research, education, and other non-commercial purposes.
+
+For more details, please refer to the [full license text](https://creativecommons.org/licenses/by-nc/4.0/legalcode).
 ## Environment
 
 

apps/molecular_docking/helixdock/README_cn.md

@@ -11,6 +11,17 @@ HelixDock还在交叉对接和基于结构的虚拟筛选基准中表现出色
 ## 在线服务
 我们同时也提供了免安装的在线预测服务[螺旋桨 HelixDock-预测](https://paddlehelix.baidu.com/app/drug/helix-dock/forecast) 。
 
+## 许可证
+
+本项目采用 [CC BY-NC 许可证](https://creativecommons.org/licenses/by-nc/4.0/)。
+
+根据此许可证，您可以自由分享、复制、发布、传播作品，但需遵循以下限制：
+
+- 署名（BY）：您必须提供适当的署名，提供指向许可证的链接，并指明是否有进行了更改。您可以使用的方式包括但不限于提供作者姓名、项目链接等信息。
+- 非商业性使用（NC）：您不得将本项目用于商业目的，但可以在学术研究、教育等非商业用途下使用。
+
+如有任何疑问，请参阅 [许可证全文](https://creativecommons.org/licenses/by-nc/4.0/legalcode)。
+
 ## 环境