another tool than vcf2maf?

[complexgenome]

Hi there,

is there another tool to make MAF from VCF files?
https://github.com/mskcc/vcf2maf

[PoisonAlien]

Hi,
You can try Funcotator. It works nicely with vcf files and outputs annotated maf.

[complexgenome]

Thanks for your reply. Yes, I am exploring gatk's functator.