Remove unused recommended flags for databases.

Author: connie

rmgpy/data/base.py

@@ -152,15 +152,13 @@ def __init__(self,
                  name='',
                  shortDesc='',
                  longDesc='',
-                 recommended=False
                  ):
         self.entries = entries or {}
         self.top = top or []
         self.label = label
         self.name = name
         self.shortDesc = shortDesc
         self.longDesc = longDesc
-        self.recommended = recommended
 
     def load(self, path, local_context=None, global_context=None):
         """
@@ -196,7 +194,6 @@ def load(self, path, local_context=None, global_context=None):
         local_context['name'] = self.name
         local_context['shortDesc'] = self.shortDesc
         local_context['longDesc'] = self.longDesc
-        local_context['recommended'] = False
         # add in anything from the Class level dictionary.
         for key, value in Database.local_context.iteritems():
             local_context[key]=value
@@ -214,7 +211,6 @@ def load(self, path, local_context=None, global_context=None):
         self.name = local_context['name']
         self.shortDesc = local_context['shortDesc']
         self.longDesc = local_context['longDesc'].strip()
-        self.recommended = local_context['recommended']
 
         # Return the loaded database (to allow for Database().load() syntax)
         return self
@@ -263,7 +259,6 @@ def save(self, path):
         f.write('longDesc = u"""\n')
         f.write(self.longDesc.strip() + '\n')
         f.write('"""\n')
-        f.write('recommended = {0}\n\n'.format(self.recommended))
 
         for entry in entries:
             self.saveEntry(f, entry)

rmgpy/data/kinetics/depository.py

@@ -111,8 +111,8 @@ class KineticsDepository(Database):
     real reactant and product species (as in a kinetics library).
     """
 
-    def __init__(self, label='', name='', shortDesc='', longDesc='', recommended=False):
-        Database.__init__(self, label=label, name=name, shortDesc=shortDesc, longDesc=longDesc, recommended=recommended)
+    def __init__(self, label='', name='', shortDesc='', longDesc=''):
+        Database.__init__(self, label=label, name=name, shortDesc=shortDesc, longDesc=longDesc)
 
     def __repr__(self):
         return '<KineticsDepository "{0}">'.format(self.label)

rmgpy/data/kinetics/family.py

@@ -415,8 +415,7 @@ def loadOld(self, path):
         for index, entry in enumerate(entries):
             entry.index = index + 1
 
-        self.rules = KineticsRules(label='{0}/rules'.format(self.label),
-                                        recommended=True)
+        self.rules = KineticsRules(label='{0}/rules'.format(self.label))
         self.rules.name = self.rules.label
         try:
             self.rules.loadOld(path, self.groups, numLabels=max(len(self.forwardTemplate.reactants), len(self.groups.top)))

rmgpy/data/kinetics/rules.py

@@ -60,8 +60,8 @@ class KineticsRules(Database):
     A class for working with a set of "rate rules" for a RMG kinetics family. 
     """
 
-    def __init__(self, label='', name='', shortDesc='', longDesc='', recommended=False):
-        Database.__init__(self, label=label, name=name, shortDesc=shortDesc, longDesc=longDesc, recommended=recommended)
+    def __init__(self, label='', name='', shortDesc='', longDesc=''):
+        Database.__init__(self, label=label, name=name, shortDesc=shortDesc, longDesc=longDesc)
 
     def __repr__(self):
         return '<KineticsRules "{0}">'.format(self.label)