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‎.gitignore‎

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@@ -21,4 +21,5 @@ project/plugins/project/
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*.iml
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deptree.txt
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scalastyle-output.xml
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‎.travis.yml‎

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language: scala
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sudo: false
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cache:
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directories:
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- $HOME/.m2
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scala:
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- 2.11.11
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script:
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- mvn scalastyle:check
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- mvn clean install

‎README.md‎

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@@ -10,3 +10,6 @@ Contains the SANSA Examples for [Apache Spark](http://spark.apache.org/).
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### [sansa-examples-flink](https://github.com/SANSA-Stack/SANSA-Examples/tree/master/sansa-examples-flink)
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Contains the SANSA Examples for [Apache Flink](http://flink.apache.org/).
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## How to Contribute
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We always welcome new contributors to the project! Please see [our contribution guide](http://sansa-stack.net/contributing-to-sansa/) for more details on how to get started contributing to SANSA.

‎pom.xml‎

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<modelVersion>4.0.0</modelVersion>
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<groupId>net.sansa-stack</groupId>
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<artifactId>sansa-examples-parent_2.11</artifactId>
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<version>2018-06</version>
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<version>2018-12</version>
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<packaging>pom</packaging>
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<name>SANSA-Examples - Parent</name>
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<description>SANSA examples</description>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
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<scala.version>2.11.11</scala.version>
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<scala.binary.version>2.11</scala.binary.version>
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<spark.version>2.3.1</spark.version>
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<flink.version>1.5.0</flink.version>
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<spark.version>2.4.0</spark.version>
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<flink.version>1.7.0</flink.version>
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<hadoop.version>2.8.3</hadoop.version>
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<jena.version>3.7.0</jena.version>
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<sansa.version>0.4.0</sansa.version>
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<jena.version>3.9.0</jena.version>
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<sansa.rdf.version>0.5.0</sansa.rdf.version>
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<sansa.owl.version>0.4.1</sansa.owl.version>
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<sansa.query.version>0.5.0</sansa.query.version>
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<sansa.inference.version>0.5.0</sansa.inference.version>
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<sansa.ml.version>0.5.0</sansa.ml.version>
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<scalastyle.config.path>${project.basedir}/scalastyle-config.xml</scalastyle.config.path>
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</properties>
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<dependencyManagement>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-rdf-spark_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.rdf.version}</version>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-rdf-flink_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.rdf.version}</version>
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</dependency>
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<!-- OWL Layer -->
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-owl-spark_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.owl.version}</version>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-owl-flink_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.owl.version}</version>
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</dependency>
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<!-- Query Layer -->
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-query-spark_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.query.version}</version>
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</dependency>
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<!-- Inference Layer -->
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-inference-parent_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-inference-spark_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.inference.version}</version>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-inference-flink_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.inference.version}</version>
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</dependency>
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<!-- ML Layer -->
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-ml-spark_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.ml.version}</version>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>sansa-ml-flink_${scala.binary.version}</artifactId>
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<version>${sansa.version}</version>
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<version>${sansa.ml.version}</version>
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</dependency>
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<dependency>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.glassfish.jersey</groupId>
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<artifactId>jersey-bom</artifactId>
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<version>2.26-b03</version>
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<type>pom</type>
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<scope>import</scope>
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</dependency>
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<dependency>
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<groupId>commons-codec</groupId>
243+
<artifactId>commons-codec</artifactId>
244+
<version>1.11</version>
245+
</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
249+
<artifactId>commons-compress</artifactId>
250+
<version>1.18</version>
251+
</dependency>
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</dependencies>
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</dependencyManagement>
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<version>2.19.1</version>
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</plugin>
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<!-- Scalastyle -->
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<plugin>
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<groupId>org.scalastyle</groupId>
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<artifactId>scalastyle-maven-plugin</artifactId>
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<version>1.0.0</version>
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<configuration>
308+
<verbose>false</verbose>
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<failOnViolation>true</failOnViolation>
310+
<includeTestSourceDirectory>true</includeTestSourceDirectory>
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<failOnWarning>false</failOnWarning>
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<sourceDirectory>${project.basedir}/src/main/scala</sourceDirectory>
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<testSourceDirectory>${project.basedir}/src/test/scala</testSourceDirectory>
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<!-- we use a central config located in the root directory -->
315+
<configLocation>${scalastyle.config.path}</configLocation>
316+
<outputFile>${project.basedir}/scalastyle-output.xml</outputFile>
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<outputEncoding>UTF-8</outputEncoding>
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</configuration>
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<executions>
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<execution>
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<goals>
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<goal>check</goal>
323+
</goals>
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</execution>
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</executions>
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</plugin>
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<!-- Scalatest -->
285329
<plugin>
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<groupId>org.scalatest</groupId>
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304348
</pluginManagement>
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</build>
306350

351+
<profiles>
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<profile>
353+
<id>root-dir</id>
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<activation>
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<file>
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<exists>${project.basedir}/../../scalastyle-config.xml</exists>
357+
</file>
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</activation>
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<properties>
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<scalastyle.config.path>${project.basedir}/../scalastyle-config.xml</scalastyle.config.path>
361+
</properties>
362+
</profile>
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</profiles>
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<repositories>
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<repository>
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<id>oss-sonatype</id>

‎sansa-examples-flink/pom.xml‎

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<parent>
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<artifactId>sansa-examples-parent_2.11</artifactId>
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<groupId>net.sansa-stack</groupId>
8-
<version>2018-06</version>
8+
<version>2018-12</version>
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</parent>
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<artifactId>sansa-examples-flink_2.11</artifactId>
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<name>SANSA Examples - Apache Flink</name>
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197197
</execution>
198198
</executions>
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</plugin>
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<plugin>
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<groupId>org.scalastyle</groupId>
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<artifactId>scalastyle-maven-plugin</artifactId>
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</plugin>
200204
</plugins>
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</build>
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‎sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/inference/RDFGraphInference.scala‎

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@@ -7,18 +7,17 @@ import java.util.Properties
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import scala.io.Source
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import com.typesafe.config.ConfigFactory
10-
import org.apache.flink.api.java.utils.ParameterTool
11-
import org.apache.flink.api.scala.ExecutionEnvironment
12-
import org.apache.flink.configuration.Configuration
13-
import org.apache.flink.runtime.webmonitor.WebMonitorUtils
14-
1510
import net.sansa_stack.inference.flink.data.{ RDFGraphLoader, RDFGraphWriter }
1611
import net.sansa_stack.inference.flink.forwardchaining.{
1712
ForwardRuleReasonerOWLHorst,
1813
ForwardRuleReasonerRDFS
1914
}
20-
import net.sansa_stack.inference.rules.ReasoningProfile._
2115
import net.sansa_stack.inference.rules.{ RDFSLevel, ReasoningProfile }
16+
import net.sansa_stack.inference.rules.ReasoningProfile._
17+
import org.apache.flink.api.java.utils.ParameterTool
18+
import org.apache.flink.api.scala.ExecutionEnvironment
19+
import org.apache.flink.configuration.Configuration
20+
import org.apache.flink.runtime.webmonitor.WebMonitorUtils
2221

2322
object RDFGraphInference {
2423

@@ -40,14 +39,14 @@ object RDFGraphInference {
4039
}
4140

4241
def run(
43-
args: Array[String],
44-
input: Seq[URI],
45-
output: URI,
46-
profile: ReasoningProfile,
42+
args: Array[String],
43+
input: Seq[URI],
44+
output: URI,
45+
profile: ReasoningProfile,
4746
writeToSingleFile: Boolean,
48-
sortedOutput: Boolean,
49-
propertiesFile: File,
50-
jobName: String): Unit = {
47+
sortedOutput: Boolean,
48+
propertiesFile: File,
49+
jobName: String): Unit = {
5150

5251
// read reasoner optimization properties
5352
val reasonerConf =
@@ -92,20 +91,17 @@ object RDFGraphInference {
9291
println(s"|G_inf| = ${inferredGraph.size()}")
9392

9493
val jn = if (jobName.isEmpty) s"RDF Graph Inference ($profile)" else jobName
95-
96-
// run the program
97-
env.execute(jn)
9894
}
9995

10096
// the config object
10197
case class Config(
102-
in: Seq[URI] = Seq(),
103-
out: URI = new URI("."),
104-
profile: ReasoningProfile = ReasoningProfile.RDFS,
105-
writeToSingleFile: Boolean = false,
106-
sortedOutput: Boolean = false,
107-
propertiesFile: File = null,
108-
jobName: String = "") // new File(getClass.getResource("reasoner.properties").toURI)
98+
in: Seq[URI] = Seq(),
99+
out: URI = new URI("."),
100+
profile: ReasoningProfile = ReasoningProfile.RDFS,
101+
writeToSingleFile: Boolean = false,
102+
sortedOutput: Boolean = false,
103+
propertiesFile: File = null,
104+
jobName: String = "") // new File(getClass.getResource("reasoner.properties").toURI)
109105

110106
// read ReasoningProfile enum
111107
implicit val profilesRead: scopt.Read[ReasoningProfile.Value] =
@@ -159,4 +155,4 @@ object RDFGraphInference {
159155

160156
}
161157
parser.showUsageOnError
162-
}
158+
}

‎sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/ml/clustering/RDFByModularityClustering.scala‎

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Original file line numberDiff line numberDiff line change
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11
package net.sansa_stack.examples.flink.ml.clustering
2+
23
import scala.collection.mutable
4+
35
import net.sansa_stack.ml.flink.clustering.{ RDFByModularityClustering => RDFByModularityClusteringAlg }
4-
import org.apache.flink.api.scala.ExecutionEnvironment
56
import org.apache.flink.api.scala._
7+
import org.apache.flink.api.scala.ExecutionEnvironment
68

79
object RDFByModularityClustering {
8-
910
def main(args: Array[String]) {
1011
parser.parse(args, Config()) match {
1112
case Some(config) =>
@@ -49,4 +50,4 @@ object RDFByModularityClustering {
4950

5051
help("help").text("prints this usage text")
5152
}
52-
}
53+
}

‎sansa-examples-flink/src/main/scala/net/sansa_stack/examples/flink/owl/OWLReaderDataSet.scala‎

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11
package net.sansa_stack.examples.flink.owl
22

3-
import net.sansa_stack.owl.flink.dataset.{ FunctionalSyntaxOWLAxiomsDataSetBuilder, ManchesterSyntaxOWLAxiomsDataSetBuilder }
4-
import org.apache.flink.api.scala.ExecutionEnvironment
3+
import de.javakaffee.kryoserializers.UnmodifiableCollectionsSerializer
54

65
import scala.collection.mutable
6+
import net.sansa_stack.owl.flink.owl._
7+
import org.apache.flink.api.scala.ExecutionEnvironment
8+
79

810
object OWLReaderDataSet {
911

@@ -20,13 +22,18 @@ object OWLReaderDataSet {
2022

2123
println(".============================================.")
2224
println("| Dataset OWL reader example (" + syntax + " syntax)|")
23-
println("`============================================´")
25+
println(".============================================.")
2426

2527
val env = ExecutionEnvironment.getExecutionEnvironment
28+
// scalastyle:off classforname
29+
env.getConfig.addDefaultKryoSerializer(
30+
Class.forName("java.util.Collections$UnmodifiableCollection"),
31+
classOf[UnmodifiableCollectionsSerializer])
32+
// scalastyle:on classforname
2633

2734
val dataSet = syntax match {
28-
case "fun" => FunctionalSyntaxOWLAxiomsDataSetBuilder.build(env, input)
29-
case "manch" => ManchesterSyntaxOWLAxiomsDataSetBuilder.build(env, input)
35+
case "fun" => env.owl(Syntax.FUNCTIONAL)(input)
36+
case "manch" => env.owl(Syntax.MANCHESTER)(input)
3037
case "owl_xml" =>
3138
throw new RuntimeException("'" + syntax + "' - Not supported, yet.")
3239
case _ =>
@@ -38,7 +45,7 @@ object OWLReaderDataSet {
3845
}
3946

4047
case class Config(
41-
in: String = "",
48+
in: String = "",
4249
syntax: String = "")
4350

4451
// the CLI parser
@@ -56,4 +63,4 @@ object OWLReaderDataSet {
5663

5764
help("help").text("prints this usage text")
5865
}
59-
}
66+
}

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