tmhmm installtion and running #53
Description
Hi, I am trying to predict transmembrane protein using tmhmm-2.0c. I have changed the path of perl like as following.
First i check the location of perl
which perl /usr/bin/perl
Then i checked the version also to make sure it is above 5.
perl -v This is perl 5, version 16, subversion 3 (v5.16.3) built for x86_64-linux-thread-multi (with 44 registered patches, see perl -V for more detail)
Copyright 1987-2012, Larry Wall
I have pasted the path (/usr/bin/perl) in the tmhmm and tmhmmformat.pl
Run the cmd:
./tmhmm --short < /mnt/genome3/Lab_Users/Kishor/DISK_3/mnspt1/blood/rsem_outdir/blood.Trinity.RSEM.retained.clustered.fasta.transdecoder.pep > tmhmm.out
But i only recevied a blank folder. It will be great for me if i get any suggestions to solve the problem. Thanks