updated to 0.8.8 to tweak deploy to install a fully functional and sane pypi release

Author: bgoli

CONTRIBUTORS.md

@@ -1,6 +1,6 @@
 # Contributors
 
-## Release 0.8.7
+## Release 0.8.8
 Many thanks to Steven Wijnen for his debugging, testing and help with the QP, constraints and FBCV3 implementation. This release supports his dcFBA/endPointFBA https://github.com/SystemsBioinformatics/dynamic-community-fba package.
 
 ## Release 0.8.4

RELEASES.md

@@ -1,6 +1,6 @@
 # Release history
 
-## Release 0.8.7 (2023)
+## Release 0.8.8 (2023)
 Intermediatery release that includes bug fixes, code cleanup and new features to support endPoint FBA. Has alpha support for Flux Balance Constraints V3 features including quadratic objectives, non-storichiometric user constraints and KeyValue pairs. Try the latest format with cbmpy.writeSBML3FBCV3.
 
 ## Release 0.8.4 (2022)

cbmpy/CBConfig.py

@@ -39,7 +39,7 @@
 
 __VERSION_MAJOR__ = 0
 __VERSION_MINOR__ = 8
-__VERSION_MICRO__ = 7
+__VERSION_MICRO__ = 8
 
 __CBCONFIG__ = {
     'VERSION_MAJOR': __VERSION_MAJOR__,

setup.py

@@ -31,14 +31,11 @@
 try:
     from setuptools import setup
 
-    install_requires_src = ['numpy', 'packaging']
+    install_requires_src = ['numpy', 'packaging', 'pyparsing', 'python_libsbml', 'lxml', 'xlrd', 'xlwt', 'swiglpk', 'scipy', 'XlsxWriter']
     extras_require_src = {
-        'sympy': ['sympy'],
-        'glpk': ['swiglpk',],
-        'sbml': ['python_libsbml', 'lxml',],
-        'all': ['sympy', 'swiglpk', 'python_libsbml', 'lxml', 'scipy'],
+        'all': ['sympy', 'numpy', 'packaging', 'pyparsing', 'python_libsbml', 'lxml', 'xlrd', 'xlwt', 'swiglpk', 'scipy', 'nose_py3', 'XlsxWriter'],
     }
-    tests_require_src = ['nose_py3']
+    tests_require_src = ['numpy', 'packaging', 'pyparsing', 'python_libsbml', 'lxml', 'numpy', 'nose_py3']
 except:
     from distutils.core import setup