fixup: transcript_patches.py

phildarnowsky-broad · phildarnowsky-broad · commit 43a1840aafa6 · 2025-10-17T15:20:21.000-04:00
diff --git a/data-pipeline/src/data_pipeline/pipelines/transcript_patches.py b/data-pipeline/src/data_pipeline/pipelines/transcript_patches.py
@@ -15,7 +15,7 @@
 pipeline.add_task(
     "annotate_patched_transcripts",
     annotate_table,
-    f"/transcripts/transcripts_grch38_annotated_1.ht",
+    "/transcripts/transcripts_grch38_annotated_1.ht",
     {
         "table_path": pipeline.get_task("extract_patched_transcripts"),
         "gnomad_constraint": "gs://gnomad-v4-data-pipeline/output/constraint/gnomad_v4_constraint.ht",

Original file line number	Diff line number	Diff line change
`@@ -15,7 +15,7 @@`
`15`	`15`	`pipeline.add_task(`
`16`	`16`	`"annotate_patched_transcripts",`
`17`	`17`	`annotate_table,`
`18`		`- f"/transcripts/transcripts_grch38_annotated_1.ht",`
	`18`	`+ "/transcripts/transcripts_grch38_annotated_1.ht",`
`19`	`19`	`{`
`20`	`20`	`"table_path": pipeline.get_task("extract_patched_transcripts"),`
`21`	`21`	`"gnomad_constraint": "gs://gnomad-v4-data-pipeline/output/constraint/gnomad_v4_constraint.ht",`