Add VEP 115 warning to RNU4ATAC

Author: phildarnowsky-broad

browser/src/GenePage/GeneFlags.spec.tsx

@@ -29,4 +29,12 @@ describe('GeneFlags', () => {
 
     expect(tree).toMatchSnapshot()
   })
+
+  test('renders VEP 115 warning for RNU4ATAC', () => {
+    const testGene = geneFactory.build({ symbol: 'RNU4ATAC', reference_genome: 'GRCh38' })
+
+    const tree = renderer.create(<GeneFlags gene={testGene} />)
+
+    expect(tree).toMatchSnapshot()
+  })
 })

browser/src/GenePage/GeneFlags.tsx

@@ -13,11 +13,15 @@ type Props = {
 }
 
 const allOfUsCMRGGenes = ['CBS', 'KCNE1', 'CRYAA']
+const vep115Genes = ['RNU4ATAC']
 
 const GeneFlags = ({ gene }: Props) => {
   const shouldDisplayCMRGWarning =
     gene.reference_genome === 'GRCh38' && allOfUsCMRGGenes.includes(gene.symbol)
 
+  const shouldDisplayVEP115Warning =
+    gene.reference_genome === 'GRCh38' && vep115Genes.includes(gene.symbol)
+
   return (
     <>
       {shouldDisplayCMRGWarning && (
@@ -35,6 +39,14 @@ const GeneFlags = ({ gene }: Props) => {
           ) callset to remedy this issue in the future.
         </p>
       )}
+      {shouldDisplayVEP115Warning && (
+        <p>
+          <Badge level="warning">Warning</Badge> MANE Select and variant consequence information in
+          this gene were annotated using Ensembl VEP version 115 (GENCODE v49). For more
+          information, see our{' '}
+          <ExternalLink href="https://gnomad.broadinstitute.org/help/vep">help page</ExternalLink>.
+        </p>
+      )}
       {gene.flags.includes('chip') && (
         <p>
           <Badge level="warning">Note</Badge> Analysis of allele balance and age data indicates that

browser/src/GenePage/__snapshots__/GeneFlags.spec.tsx.snap

@@ -32,6 +32,27 @@ exports[`GeneFlags renders CMRG flag if one of 3 relevant genes 1`] = `
 </p>
 `;
 
+exports[`GeneFlags renders VEP 115 warning for RNU4ATAC 1`] = `
+<p>
+  <span
+    className="Badge__BadgeWrapper-sc-j4izdp-1 gRPPXC"
+  >
+    Warning
+  </span>
+   MANE Select and variant consequence information in this gene were annotated using Ensembl VEP version 115 (GENCODE v49). For more information, see our
+   
+  <a
+    className="Link-sc-14lgydv-0 Link__ExternalLink-sc-14lgydv-1 kswbwW"
+    href="https://gnomad.broadinstitute.org/help/vep"
+    rel="noopener noreferrer"
+    target="_blank"
+  >
+    help page
+  </a>
+  .
+</p>
+`;
+
 exports[`GeneFlags renders chip flag if present on gene 1`] = `
 <p>
   <span