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fixup: annotate_transcript_consequences.py
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data-pipeline/src/data_pipeline/data_types/variant/transcript_consequence/annotate_transcript_consequences.py

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OMIT_CONSEQUENCE_TERMS = hl.set(["upstream_gene_variant", "downstream_gene_variant"])
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# ruff doesn't like explicit comparisons to False, but we need them in here, so:
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# ruff: noqa: E712
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# ruff doesn't like explicit comparisons to None, but we need them in here, so:
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# ruff: noqa: E711
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def annotate_transcript_consequences(variants_path, transcripts_path=None, mane_transcripts_path=None):

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