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feat(data-pipelines): Allow for starting Dataproc clusters using custom OS images #1577

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feat(data-pipelines): Allow for starting Dataproc clusters using custom OS images #1577

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b245b4b
Add helpers for starting custom Dataproc cluster
nadeaujoshua Jun 18, 2024
8b2b2eb
Add note on starting Dataproc with custom img
nadeaujoshua Jun 18, 2024
7757194
Remove poetry from data-pipeline src
nadeaujoshua Jun 18, 2024
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5 changes: 5 additions & 0 deletions data-pipeline/README.md
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Expand Up @@ -58,6 +58,11 @@ The ClinVar pipelines must be run on clusters with an appropriate version of VEP
./deployctl dataproc-cluster start <cluster-name>
```

NOTE: Starting with `gnomad version 4.1`, it is highly recommended to specify a
custom OS image that was built for that gnomAD version. To see these images, run
`gcloud compute images list --filter="family=dataproc-custom-image"`. You can then
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@rileyhgrant rileyhgrant Aug 20, 2024

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Running this tells me 0 images were found:

❯ gcloud compute images list --filter="family=dataproc-custom-image"
Listed 0 items.

My gcloud config's project is set to exac-gnomad, maybe that's the reason?

pass the desired image name to the above `start` command using the `--image` flag.

- Run a pipeline.

A list of all pipelines can be seen with `./deployctl data-pipeline run --help`.
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