minior fix

minior fix

minior fix

Author: zhangyuxuann

protenix/openfold_local/model/primitives.py

@@ -544,13 +544,6 @@ def forward(
 
         if use_memory_efficient_kernel:
             raise Exception(f"use_memory_efficient_kernel=True not supported!!!")
-            if len(biases) > 2:
-                raise ValueError(
-                    "If use_memory_efficient_kernel is True, you may only "
-                    "provide up to two bias terms"
-                )
-            o = attention_core(q, k, v, *((biases + [None] * 2)[:2]))
-            o = o.transpose(-2, -3)
         elif use_deepspeed_evo_attention:
             if len(biases) > 2:
                 raise ValueError(

scripts/msa/step1-get_prot_seq.py

@@ -30,6 +30,7 @@ def get_seqs(mmcif_file):
 
     entity_poly = mmcif_parser.get_category_table("entity_poly")
     if entity_poly is None:
+        pdb_id = mmcif_file.name.split(".")[0]
         return pdb_id, None
     entity_poly["mmcif_seq_old"] = entity_poly.pdbx_seq_one_letter_code_can.str.replace(
         "\n", ""