Skip to content

CharGer::runIndelModules Error: #50

@rescuz

Description

@rescuz

Hello, I had this question when I ran charger:
CharGer::runIndelModules Error: Cannot evaluate PVS1 or PM4: No gene list supplied. which argument should I provide?
I used charger -f ${input} -o ${out} -D --inheritanceGeneList ${inherit} --mac-clinvar-tsv ${clinvar} --PP2GeneList ${pp2} -z ${mmVariants} --exac-vcf ${ExAC} -H $d --BP1GeneList ${bp1} -g ${mmGenes}.

Another question : Unsupported VEP version or no gnomAD AF annotation in input file; will search for ExAC frequencies...
my input file was annotated with VEP. I want you will reply to me soon, thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions