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-p argument removed
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AddedAnnotations.py

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@@ -132,7 +132,6 @@ def run(filename):
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Example:
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python AddedAnnotations.py -w '[{"/path/to/working/folder"}]'
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-f '[{"/path/to/EMDB/header/files/folder"}]'
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-p '[{"/path/to/PDBe/files/folder"}]'
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--uniprot --CPX --component --model --weight --pmc --GO --interpro --pfam --pbdekb
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--cath --scop --scop2 --scop2B --rfam
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"""
@@ -142,7 +141,6 @@ def run(filename):
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parser.add_argument("-h", "--help", action="help", help="Show this help message and exit.")
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parser.add_argument('-w', '--workDir', type=Path, help="Main working directory path .")
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parser.add_argument('-f', '--headerDir', type=Path, help="Directory path to the EMDB version 3.0 header files.")
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parser.add_argument('-p', '--PDBeDir', type=Path, default=False,help="Directory path to the PDBe Complex portal mapping files.")
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parser.add_argument('-t', '--threads', type=int, default=4, help="Number of threads.")
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parser.add_argument('--json', type=Path, help="Path to release json file.")
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parser.add_argument("--all", type=bool, nargs='?', const=True, default=False, help="Fetch all external resources.")

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