@@ -132,7 +132,6 @@ def run(filename):
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Example:
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python AddedAnnotations.py -w '[{"/path/to/working/folder"}]'
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-f '[{"/path/to/EMDB/header/files/folder"}]'
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- -p '[{"/path/to/PDBe/files/folder"}]'
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--uniprot --CPX --component --model --weight --pmc --GO --interpro --pfam --pbdekb
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--cath --scop --scop2 --scop2B --rfam
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"""
@@ -142,7 +141,6 @@ def run(filename):
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parser .add_argument ("-h" , "--help" , action = "help" , help = "Show this help message and exit." )
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parser .add_argument ('-w' , '--workDir' , type = Path , help = "Main working directory path ." )
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parser .add_argument ('-f' , '--headerDir' , type = Path , help = "Directory path to the EMDB version 3.0 header files." )
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- parser .add_argument ('-p' , '--PDBeDir' , type = Path , default = False ,help = "Directory path to the PDBe Complex portal mapping files." )
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parser .add_argument ('-t' , '--threads' , type = int , default = 4 , help = "Number of threads." )
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parser .add_argument ('--json' , type = Path , help = "Path to release json file." )
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parser .add_argument ("--all" , type = bool , nargs = '?' , const = True , default = False , help = "Fetch all external resources." )
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