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lines changed Original file line number Diff line number Diff line change @@ -52,8 +52,6 @@ pmc: https://www.ebi.ac.uk/europepmc/webservices/rest/searchPOST
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| chem_comp_list.xml | Chemical component list | https://ftp.ebi.ac.uk/pub/databases/msd/pdbechem_v2/ccd/chem_comp_list.xml |
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| PMID_PMCID_DOI.csv.gz | Europe PMC dataset (compressed) | https://europepmc.org/pub/databases/pmc/DOI/PMID_PMCID_DOI.csv.gz |
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| PMID_PMCID_DOI.csv | Unzipped version of the Europe PMC dataset | https://ftp.ebi.ac.uk/pub/databases/pmc/DOI/PMID_PMCID_DOI.csv |
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- | emdb_pubmed | Mapping file created after running PublicationMapping.py | emdb_pubmed.log |
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- | emdb_orcid | Mapping file created after running PublicationMapping.py | emdb_orcid.log |
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| assembly_ftp | PDB assemblies | https://ftp.ebi.ac.uk/pub/databases/msd/assemblies/split/ |
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| BLAST_DB | UniProt BLAST database | https://ftp.uniprot.org/pub/databases/uniprot/uniprot_sprot/uniprot_sprot.fasta.gz |
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| sifts_GO | PDB chain Gene Ontology mapping | https://ftp.ebi.ac.uk/pub/databases/msd/sifts/pdb_chain_go.csv |
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