diff --git a/pipelines/atacseq.yaml b/pipelines/atacseq.yaml
index 1d5406e..7951844 100755
--- a/pipelines/atacseq.yaml
+++ b/pipelines/atacseq.yaml
@@ -7,16 +7,19 @@ resources:
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/indexed_bowtie2/mm10
     mm9: /data/prod/ngs_resources/genomes/mm9/forBowtie2/mm9
     ercc: /data/groups/lab_bock/shared/resources/genomes/ERCC92/indexed_bowtie2/ERCC92
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/indexed_bowtie2/Calbicans_SC5314_A22
   chromosome_sizes:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.chromSizes
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.chromSizes
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/mm10.chromSizes
     mm9: /data/prod/ngs_resources/genomes/mm9/mm9_chromlength.txt
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22.chromSizes
   genome_windows:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.genomeWindows_1kb.bed
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.genomeWindows_1kb.bed
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/mm10.genomeWindows_1kb.bed
     mm9: /data/groups/lab_bock/shared/resources/genomes/mm9/mm9_genomeWindows_1kb.bed
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22_genomeWindows_1kb.bed
   tss:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.genomeWindows_1kb.bed
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.genomeWindows_1kb.bed
@@ -40,6 +43,7 @@ resources:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.fa
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.fa
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/mm10.fa
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22.fa
 
 
 # The following section contains command-line tools used by the pipeline
diff --git a/pipelines/chipseq.yaml b/pipelines/chipseq.yaml
index 9a977b1..bffed52 100644
--- a/pipelines/chipseq.yaml
+++ b/pipelines/chipseq.yaml
@@ -7,15 +7,18 @@ resources:
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/indexed_bowtie2/mm10
     sacCer3: /data/groups/lab_bock/shared/resources/genomes/sacCer3/indexed_bowtie2/sacCer3
     ercc: /data/groups/lab_bock/shared/resources/genomes/ERCC92/indexed_bowtie2/ERCC92
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/indexed_bowtie2/Calbicans_SC5314_A22
   chromosome_sizes:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.chromSizes
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.chromSizes
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/mm10.chromSizes
     sacCer3: /data/groups/lab_bock/shared/resources/genomes/sacCer3/sacCer3.chrom.sizes
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22.chromSizes
   genome_windows:
     hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.genomeWindows_1kb.bed
     hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.genomeWindows_1kb.bed
     mm10: /data/groups/lab_bock/shared/resources/genomes/mm10/mm10.genomeWindows_1kb.bed
+    Calbicans_SC5314_A22: /data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22_genomeWindows_1kb.bed
   # tss:
   #   hg38: /data/groups/lab_bock/shared/resources/genomes/hg38/hg38.genomeWindows_1kb.bed
   #   hg19: /data/groups/lab_bock/shared/resources/genomes/hg19/hg19.genomeWindows_1kb.bed
diff --git a/pipelines/tools/fix_bedfile_genome_boundaries.py b/pipelines/tools/fix_bedfile_genome_boundaries.py
index 08613db..0254e00 100755
--- a/pipelines/tools/fix_bedfile_genome_boundaries.py
+++ b/pipelines/tools/fix_bedfile_genome_boundaries.py
@@ -19,7 +19,8 @@ def getChrSizes(chrmFile):
     "hg38": "/data/groups/lab_bock/shared/resources/genomes/hg38/hg38.chromSizes",
     "hg19": "/data/groups/lab_bock/shared/resources/genomes/hg19/hg19.chromSizes",
     "mm10": "/data/groups/lab_bock/shared/resources/genomes/mm10/mm10.chromSizes",
-    "dr7": "/data/groups/lab_bock/shared/resources/genomes/dr7/dr7.chromSizes"
+    "dr7": "/data/groups/lab_bock/shared/resources/genomes/dr7/dr7.chromSizes",
+    "Calbicans_SC5314_A22": "/data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22.chromSizes"
 }
 
 genome = sys.argv[1]
diff --git a/pipelines/tools/shift_reads.py b/pipelines/tools/shift_reads.py
index 7be5a26..a2227d3 100755
--- a/pipelines/tools/shift_reads.py
+++ b/pipelines/tools/shift_reads.py
@@ -19,7 +19,8 @@ def getChrSizes(chrmFile):
     "hg38": "/data/groups/lab_bock/shared/resources/genomes/hg38/hg38.chromSizes",
     "hg19": "/data/groups/lab_bock/shared/resources/genomes/hg19/hg19.chromSizes",
     "mm10": "/data/groups/lab_bock/shared/resources/genomes/mm10/mm10.chromSizes",
-    "dr7": "/data/groups/lab_bock/shared/resources/genomes/dr7/dr7.chromSizes"
+    "dr7": "/data/groups/lab_bock/shared/resources/genomes/dr7/dr7.chromSizes",
+    "Calbicans_SC5314_A22": "/data/groups/lab_bock/shared/resources/genomes/Calbicans_SC5314_A22/Calbicans_SC5314_A22.chromSizes"
 }