How to use the HBV_DRUG_RESISTANCE extension in HBV-GLUE?

[jonbra]

Hi,

I need some help understanding how to use the HBV_DRUG_RESISTANCE extension project (https://github.com/giffordlabcvr/HBV_DRUG_RESISTANCE
) to identify potential resistance in HBV.

I've previously used the Docker version of HCV-GLUE to identify resistance-associated amino acid variants, following the examples in the online documentation (for example, including the command -i project hcv module phdrReportingController invoke-function reportBam in my docker run command).

But if I understand correctly, this functionality is pre-built into the HCV-GLUE container? How can I apply the HBV_DRUG_RESISTANCE extension in the HBV-GLUE container to achieve something similar?

If you could provide an example command for running the HBV_DRUG_RESISTANCE extension on a BAM file, that would be really helpful.

Thanks,
Jon