Merge pull request #19 from hancockinformatics/develop

Merge Develop 1.7.64

Author: travis-m-blimkie

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: MetaBridgeShiny
 Title: Map Metabolites for Omics Integration
-Version: 1.7.52
+Version: 1.7.64
 Authors@R: 
     c(person(given = "Travis",
            family = "Blimkie",

NEWS.md

@@ -0,0 +1,12 @@
+# MetaBridge 1.7.64
+
+## Improvements and changes
+
+* Various tweaks and edits to UI text (1aa3661)
+* Font size for DataTables was reduced for better fit (b3f6034)
+* Updated workflow (README) and tutorial images, plus text as needed (d2415e7, cf755b7)
+
+## Bugfixes
+
+* "ifelse" statement used to determine notification duration now works properly (ebe83a3)
+* Modified some internal and external links (cab75e1)

R/utils.R

@@ -85,12 +85,12 @@ mappingAlert <- function(message, suggest, status) {
   showNotification(
     id = "mappingAlert",
     type = n_type,
-    duration = ifelse(n_type == "success", 10, 20),
+    duration = ifelse(n_type == "message", 5, 10),
     ui = HTML(paste0(
       "<h4 class='alert-heading'><b>", n_header, "</b></h4>",
       "<p class='mb-0'>", n_ui, "</p>"
     )),
-    action = n_action,
+    action = n_action
   )
 }
 

README.md

@@ -16,9 +16,9 @@ pathways and reactions in which the metabolite is involved.
 MetaBridge supports integrative multi-omic analyses by identifying the enzymes
 that directly interact with your metabolites of interest, providing genes which
 may then be easily integrated with results from other omics methods. An example
-integrative analysis pipeline using 
-[MetaboAnalyst](https://www.metaboanalyst.ca/MetaboAnalyst/ModuleView.xhtml),
-[MetaBridge](https://metabridge.org), and 
+integrative analysis pipeline using
+[MetaboAnalyst](https://www.metaboanalyst.ca/),
+[MetaBridge](https://metabridge.org), and
 [NetworkAnalyst](https://www.networkanalyst.ca/) is outlined below:
 
 ![](www/img/metabridge_workflow.svg)