Update all documentation

Author: riteshnoronha

.DS_Store

@@ -376,6 +376,6 @@ sbomqs compliance --fsct problematic.json --debug
 
 ## Related Commands
 
-- [`score`](./score-command.md) - Get overall quality score
-- [`list`](./list-command.md) - Find components missing compliance fields
-- [`share`](./share-command.md) - Share compliance reports
+- [`score`](./score.md) - Get overall quality score
+- [`list`](./list.md) - Find components missing compliance fields
+- [`share`](./share.md) - Share compliance reports

README.md

@@ -439,6 +439,6 @@ sbomqs dtrackScore -u "$DT_URL" -k "$DT_KEY" "$PROJECT_ID" --debug
 
 ## Related Commands
 
-- [`score`](./score-command.md) - Score local SBOM files
-- [`compliance`](./compliance-command.md) - Check compliance standards
-- [`share`](./share-command.md) - Generate shareable reports
+- [`score`](./score.md) - Score local SBOM files
+- [`compliance`](./compliance.md) - Check compliance standards
+- [`share`](./share.md) - Generate shareable reports

docs/Features.md

@@ -499,6 +499,6 @@ git commit -m "Initial SBOM quality standards"
 
 ## Related Commands
 
-- [`score`](./score-command.md) - Use custom configurations for scoring
-- [`compliance`](./compliance-command.md) - Check against standards
-- [`list`](./list-command.md) - Verify feature presence
+- [`score`](./score.md) - Use custom configurations for scoring
+- [`compliance`](./compliance.md) - Check against standards
+- [`list`](./list.md) - Verify feature presence

docs/compliance-command.md renamed to docs/commands/compliance.md

@@ -304,7 +304,7 @@ sbomqs score large-sbom.json --json | jq '.files[0].avg_score'
 
 ## Related Commands
 
-- [`compliance`](./compliance-command.md) - Check regulatory compliance
-- [`list`](./list-command.md) - Analyze specific SBOM features
-- [`share`](./share-command.md) - Generate shareable score reports
-- [`generate`](./generate-command.md) - Create custom scoring profiles
+- [`compliance`](./compliance.md) - Check regulatory compliance
+- [`list`](./list.md) - Analyze specific SBOM features
+- [`share`](./share.md) - Generate shareable score reports
+- [`generate`](./generate.md) - Create custom scoring profiles

docs/dtrack-command.md renamed to docs/commands/dtrack.md

@@ -383,6 +383,6 @@ done
 
 ## Related Commands
 
-- [`score`](./score-command.md) - Calculate quality score
-- [`compliance`](./compliance-command.md) - Check compliance
-- [`list`](./list-command.md) - Analyze SBOM components
+- [`score`](./score.md) - Calculate quality score
+- [`compliance`](./compliance.md) - Check compliance
+- [`list`](./list.md) - Analyze SBOM components

docs/generate-command.md renamed to docs/commands/generate.md

@@ -339,6 +339,6 @@ pipeline {
 
 ## Related Commands
 
-- [`score`](./score-command.md) - Score SBOMs with current version
-- [`compliance`](./compliance-command.md) - Check compliance with version-specific features
-- [`generate`](./generate-command.md) - Generate configs compatible with version
+- [`score`](./score.md) - Score SBOMs with current version
+- [`compliance`](./compliance.md) - Check compliance with version-specific features
+- [`generate`](./generate.md) - Generate configs compatible with version