fixed ci scripts and formatting

Author: prasad-sawantdesai

ci/build_dd_zip.sh

@@ -3,18 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules..."
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load Python
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Build the DD zip
 rm -rf venv  # Environment should be clean, but remove directory to be sure

ci/build_docs_and_dist.sh

@@ -3,7 +3,9 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules:" $@
 
 # Set up environment such that module files can be loaded
@@ -14,8 +16,6 @@ module load $@
 
 # Debuggging:
 echo "Done loading modules"
-set -x
-
 
 # Set up the testing venv
 rm -rf venv  # Environment should be clean, but remove directory to be sure
@@ -41,3 +41,5 @@ export SPHINXOPTS='-W -n --keep-going'
 
 # Run sphinx to create the documentation
 make -C docs clean html
+
+deactivate

ci/linting.sh

@@ -3,18 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules..."
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load Python
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Create a venv
 rm -rf venv
@@ -26,3 +31,5 @@ pip install --upgrade 'black >=24,<25' flake8
 
 black --check imas
 flake8 imas
+
+deactivate

ci/run_benchmark.sh

@@ -17,12 +17,16 @@ source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
 # IMAS-AL-Python/5.2.1-intel-2023b-DD-3.41.0 Saxon-HE/12.4-Java-21
-module load IMAS-AL-Core/5.4.3-intel-2023b Saxon-HE/12.4-Java-21
+if [ -z "$@" ]; then
+    module load IMAS-AL-Core
+else
+    module load $@
+fi
+
 
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Export current PYTHONPATH so ASV benchmarks can import imas
 export ASV_PYTHONPATH="$PYTHONPATH"
@@ -71,3 +75,5 @@ asv publish
 # And persistently store them
 cp -rf .asv/{results,html} "$BENCHMARKS_DIR"
 
+deactivate
+

ci/run_pytest.sh

@@ -3,19 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules:" $@
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load IMAS-AL-Core
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
-
 
 # Set up the testing venv
 rm -rf venv  # Environment should be clean, but remove directory to be sure
@@ -33,5 +37,8 @@ pip freeze
 # Clean artifacts created by pytest
 rm -f junit.xml
 rm -rf htmlcov
+mkdir -p ~/tmp
+export PYTEST_DEBUG_TEMPROOT=~/tmp
+python -m pytest -n=auto --cov=imas --cov-report=term-missing --cov-report=html --junit-xml=junit.xml -x
 
-python -m pytest -n=auto --cov=imas --cov-report=term-missing --cov-report=html --junit-xml=junit.xml
+deactivate