Merge remote-tracking branch 'upstream' into empty

* upstream: (115 commits)
  Capitalize Get Help (mne-tools#13340)
  Website page load fixes (mostly) (mne-tools#13343)
  MAINT: Restore statsmodels to pip-pre (mne-tools#13345)
  BUG: Fix bug with reading old reports (mne-tools#13341)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13338)
  MAINT: Fix ref cycle with vtkPolyData (mne-tools#13336)
  MAINT: Dont set private attributes for PyVista Actor (mne-tools#13334)
  Add icon links to our donation pages (mne-tools#13331)
  MAINT: Dont set attribute on PolyData (mne-tools#13330)
  MAINT: Bump mins, deprecations (mne-tools#13322)
  Fix changes in SSD for backward compatibility [circle deploy] (mne-tools#13327)
  ENH: Add GED transformer (mne-tools#13259)
  FIX: Links
  MAINT: Stabilize MxNE tests (mne-tools#13321)
  FIX: DigMontage.rename_channels should return self (mne-tools#13320)
  MAINT: Prep for release (mne-tools#13319)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13317)
  MAINT: Update code credit (mne-tools#13318)
  MAINT: Make MxNE test more robust (mne-tools#13315)
  Adjust Pupil channel units (again) (mne-tools#13314)
  ...

Author: larsoner

.circleci/config.yml

@@ -93,11 +93,6 @@ jobs:
           name: Set BASH_ENV
           command: ./tools/circleci_bash_env.sh
 
-      - run:
-          name: check neuromag2ft
-          command: |
-            neuromag2ft --version
-
       - run:
           name: Install fonts needed for diagrams
           command: |
@@ -244,6 +239,7 @@ jobs:
               make test-doc;
               mkdir -p doc/_build/test-results/test-doc;
               cp junit-results.xml doc/_build/test-results/test-doc/junit.xml;
+              cp coverage.xml doc/_build/test-results/test-doc/coverage.xml;
             fi;
       # Build docs
       - run:
@@ -288,6 +284,15 @@ jobs:
       - store_artifacts:
           path: doc/_build/test-results
           destination: test-results
+      # Upload test results to Codecov
+      - run:
+          name: Upload test results to Codecov
+          environment:
+            CODECOV_TOKEN: fb4c4a94-72d7-4743-bb08-af25b623a29a
+          command: |
+            if [[ -f doc/_build/test-results/test-doc/coverage.xml ]]; then
+              bash <(curl -s https://codecov.io/bash) -f doc/_build/test-results/test-doc/coverage.xml || true
+            fi
       # Save the SG RST
       - store_artifacts:
           path: doc/auto_examples.zip

.github/workflows/autofix.yml

@@ -21,4 +21,4 @@ jobs:
       - run: pip install --upgrade towncrier pygithub gitpython numpy
       - run: python ./.github/actions/rename_towncrier/rename_towncrier.py
       - run: python ./tools/dev/ensure_headers.py
-      - uses: autofix-ci/action@551dded8c6cc8a1054039c8bc0b8b48c51dfc6ef
+      - uses: autofix-ci/action@635ffb0c9798bd160680f18fd73371e355b85f27

.github/workflows/circle_artifacts.yml

@@ -5,7 +5,7 @@ permissions:
 jobs:
   circleci_artifacts_redirector_job:
     if: "${{ startsWith(github.event.context, 'ci/circleci: build_docs') }}"
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
     name: Run CircleCI artifacts redirector
     steps:
       - name: GitHub Action step

.github/workflows/tests.yml

@@ -7,6 +7,14 @@ on:  # yamllint disable-line rule:truthy
     branches: ["main", "maint/*"]
   pull_request:
     branches: ["main", "maint/*"]
+  # adapted from spyder-ide/spyder
+  workflow_dispatch:
+    inputs:
+      ssh:
+        description: 'Enable ssh debugging'
+        required: false
+        default: false
+        type: boolean
 
 permissions:
   contents: read
@@ -22,7 +30,7 @@ jobs:
           persist-credentials: false
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
+          python-version: '3.13'
       - uses: pre-commit/action@v3.0.1
       - run: pip install mypy numpy scipy vulture
       - run: mypy
@@ -62,34 +70,49 @@ jobs:
             python: '3.13'
             kind: pip
           - os: ubuntu-latest
-            python: '3.12'
+            python: '3.13'
             kind: pip-pre
           - os: ubuntu-latest
-            python: '3.12'
+            python: '3.13'
             kind: conda
           - os: macos-latest  # arm64 (Apple Silicon)
-            python: '3.12'
+            python: '3.13'
             kind: mamba
           - os: macos-13  # latest Intel release
-            python: '3.12'
+            python: '3.13'
             kind: mamba
           - os: windows-latest
             python: '3.10'
             kind: mamba
           - os: ubuntu-latest
             python: '3.10'
             kind: minimal
-          - os: ubuntu-20.04
+          - os: ubuntu-22.04
             python: '3.10'
             kind: old
     steps:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0
           persist-credentials: false
+      - name: Get commit message
+        run: echo "COMMIT_MESSAGE=$(git show -s --format=%s ${{ github.event.pull_request.head.sha || github.sha }})" | tee -a ${GITHUB_ENV}
+      - name: Triage SSH
+        run: |
+          if [[ "${{ inputs.ssh }}" == "true" ]] || [[ "$COMMIT_MESSAGE" == *"[actions ssh]"* ]]; then
+            echo "ENABLE_SSH=true" | tee -a $GITHUB_ENV
+          else
+            echo "ENABLE_SSH=false" | tee -a $GITHUB_ENV
+          fi
+      - name: Setup Remote SSH Connection
+        if: env.ENABLE_SSH == 'true'
+        uses: mxschmitt/action-tmate@v3
+        timeout-minutes: 80
+        with:
+          detached: true
       - run: ./tools/github_actions_env_vars.sh
       # Xvfb/OpenGL
-      - uses: pyvista/setup-headless-display-action@v3
+      - uses: pyvista/setup-headless-display-action@v4
         with:
           qt: true
           pyvista: false

.github/zizmor.yml

@@ -0,0 +1,5 @@
+rules:
+  unpinned-uses:
+    config:
+      policies:
+        "*": ref-pin

.mailmap

@@ -30,6 +30,7 @@ Asish Panda <asishrocks95@gmail.com> kaichogami <asishrocks95@gmail.com>
 Basile Pinsard <basile.pinsard@umontreal.ca>
 Brad Buran <bburan@galenea.com> Brad Buran <bburan@alum.mit.edu>
 Britta Westner <britta.wstnr@gmail.com> britta-wstnr <britta.wstnr@gmail.com>
+Bruno Aristimunha <b.aristimunha@gmail.com>
 btkcodedev <btk.codedev@gmail.com>
 buildqa <s1152yb68@contbay.com>
 Burkhard Maess <burkhard.maess@arcor.de> Burkhard Maess <bmaess@users.noreply.github.com>
@@ -184,11 +185,13 @@ Kaisu Lankinen <41806798+klankinen@users.noreply.github.com> klankinen <41806798
 Kambiz Tabavi <ktavabi@gmail.com> Kambiz Tavabi <ktavabi@uw.edu>
 Kambiz Tabavi <ktavabi@gmail.com> kambysese <ktavabi@gmail.com>
 Katarina Slama <slama@berkeley.edu> katarinaslama <slama@berkeley.edu>
+Katia Al-Amir <129207373+katia-sentry@users.noreply.github.com> Katia <129207373+katia-sentry@users.noreply.github.com>
 Kostiantyn Maksymenko <makkostya@ukr.net> kostiantyn maksymenko <kostiantyn.maksymenko@inria.fr>
 Kostiantyn Maksymenko <makkostya@ukr.net> Maksymenko Kostiantyn <kostiantyn.maksymenko@inria.fr>
 Kostiantyn Maksymenko <makkostya@ukr.net> Maksymenko Kostiantyn <makkostya@ukr.net>
 Laetitia Grabot <laetitia.grabot@gmail.com> LaetitiaG <laetitia.grabot@gmail.com>
 Larry Eisenman <leisenman@wustl.edu> lneisenman <lneisenman@hotmail.com>
+Laurent Lementec <laurent.lementec@gmail.com>
 Lenny Varghese <lennyvarghese@users.noreply.github.com> lennyvarghese <lennyvarghese@users.noreply.github.com>
 Liberty Hamilton <libertyhamilton@gmail.com>
 Lorenz Esch <Lorenz.Esch@tu-ilmenau.de> Lorenz Esch <lorenzesch@hotmail.com>
@@ -247,6 +250,7 @@ Mikołaj Magnuski <mmagnuski@swps.edu.pl> Mikolaj Magnuski <mmagnuski@swps.edu.p
 Mikołaj Magnuski <mmagnuski@swps.edu.pl> mmagnuski <mmagnuski@swps.edu.pl>
 Mohamed Sherif <molpsychistb@gmail.com> mohdsherif <molpsychistb@gmail.com>
 Mohammad Daneshzand <55800429+mdaneshzand@users.noreply.github.com> mdaneshzand <55800429+mdaneshzand@users.noreply.github.com>
+Mojackhak <23111220065@m.fudan.edu.cn> Ankang Hu <23111220065@m.fudan.edu.cn>
 Motofumi Fushimi <30593537+motofumi-fushimi@users.noreply.github.com> motofumi-fushimi <30593537+motofumi-fushimi@users.noreply.github.com>
 Natalie Klein <neklein@andrew.cmu.edu> natalieklein <neklein@andrew.cmu.edu>
 Nathalie Gayraud <nathalie.gayraud@inria.fr> Nathalie <nat.gayraud@gmail.com>
@@ -303,10 +307,12 @@ Romain Trachel <romain.trachel@inria.fr> Romain Trachel <romain.trachel@ens.fr>
 Romain Trachel <romain.trachel@inria.fr> Romain Trachel <trachelr@gmail.com>
 Romain Trachel <romain.trachel@inria.fr> trachelr <romain.trachel@inria.fr>
 Roman Goj <roman.goj@gmail.com>
+Rongfei Jin <131315c@gmail.com> GreasyCat <131315c@gmail.com>
 Ross Maddox <ross.maddox@rochester.edu> rkmaddox <ross.maddox@gmail.com>
 Ross Maddox <ross.maddox@rochester.edu> Ross Maddox <rkmaddox@uw.edu>
 Ross Maddox <ross.maddox@rochester.edu> unknown <rkmaddox@uw.edu>
 Rotem Falach <falachrotem@gmail.com> Falach <rotemfa0@gmail.com>
+Roy Eric Wieske <139973278+Randomidous@users.noreply.github.com> Roy Eric <139973278+Randomidous@users.noreply.github.com>
 Ryan Law <ryan.law@mpi.nl> Ryan Law <ryalaw@dccn.nl>
 Ryan Law <ryan.law@mpi.nl> Ryan M.C. Law <ryan.law@mrc-cbu.cam.ac.uk>
 Sammi Chekroud <sammi.chekroud@psy.ox.ac.uk>
@@ -316,13 +322,14 @@ Sara Sommariva <sommariva@dima.unige.it> sarasommariva <sommariva@dima.unige.it>
 Sebastien Treguer <sfox@riseup.net> DataFox <sfox@riseup.net>
 Sena Er <2799280+sena-neuro@users.noreply.github.com> Sena <2799280+sena-neuro@users.noreply.github.com>
 Senwen Deng <36327760+snwnde@users.noreply.github.com> Senwen DENG <36327760+snwnde@users.noreply.github.com>
-Shristi Baral <shristi.baral@aalto.fi> Shristi Baral <shristi.baral@aalto.fi>
+Shristi Baral <shristi.baral@aalto.fi> shristi <shristi.baral@aalto.fi>
 Silvia Cotroneo <78911192+sfc-neuro@users.noreply.github.com> sfc-neuro <78911192+sfc-neuro@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> Simon Kern <14980558+skjerns@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> skjerns <14980558+skjerns@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> skjerns <simon.kern@online.de>
 Sondre Foslien <sondre.foslien@gmail.com> sondrfos <sondre.foslien@gmail.com>
 Sophie Herbst <ksherbst@gmail.com>
+Steinn Hauser Magnússon <hausersteinn@gmail.com> Steinn Magnusson <s.magnusson@senec.com>
 Steve Matindi <stevematindi@gmail.com> stevemats <stevematindi@gmail.com>
 Steven Bierer <neurolaunch@gmail.copm> Steven Bierer <40672003+NeuroLaunch@users.noreply.github.com>
 Steven M. Gutstein <s.m.gutstein@gmail.com> S. M. Gutstein <s.m.gutstein@gmail.com>
@@ -347,10 +354,12 @@ Tom Stone <TASTONE@mgh.harvard.edu> Stone <TASTONE@mgh.harvard.edu>
 Tom Stone <TASTONE@mgh.harvard.edu> tomdstone <77251489+tomdstone@users.noreply.github.com>
 Tristan Stenner <ttstenner@gmail.com> Tristan Stenner <derstenner@gmail.com>
 Tziona NessAiver <tzionan@mail.tau.ac.il> TzionaN <tzionan@mail.tau.ac.il>
+user27182 <89109579+user27182@users.noreply.github.com>
 Valerii Chirkov <vagechirkov@gmail.com> Valerii <42982039+vagechirkov@users.noreply.github.com>
 Valerii Chirkov <vagechirkov@gmail.com> Valerii <vagechirkov@gmail.com>
 Velu Prabhakar Kumaravel <veluprabhakarkumaravel@Velus-MBP.lan> Velu Prabhakar Kumaravel <veluprabhakarkumaravel@Velus-MBP.lan>
 Victoria Peterson <victoriapeterson09@gmail.com> vpeterson <victoriapeterson09@gmail.com>
+Wei Xu <weixu@mail.bnu.edu.cn> Wei <weixu@mail.bnu.edu.cn>
 Will Turner <wturner@student.unimelb.edu.au> Will Turner <wturner@student.unimelb.edu.au>
 Yiping Zuo <frostime@foxmail.com> Frostime <frostime@foxmail.com>
 Yousra Bekhti <yousra.bekhti@gmail.com> Yoursa BEKHTI <ybekhti@is222485.intra.cea.fr>

.pre-commit-config.yaml

@@ -1,18 +1,18 @@
 repos:
   # Ruff mne
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.6
+    rev: v0.12.4
     hooks:
-      - id: ruff
+      - id: ruff-check
         name: ruff lint mne
         args: ["--fix"]
         files: ^mne/|^tools/
         exclude: vulture_allowlist.py
-      - id: ruff
+      - id: ruff-check
         name: ruff lint mne preview
         args: ["--fix", "--preview", "--select=NPY201"]
         files: ^mne/|^tools/
-      - id: ruff
+      - id: ruff-check
         name: ruff lint doc, tutorials, and examples
         # D103: missing docstring in public function
         # D400: docstring first line must end with period
@@ -33,14 +33,14 @@ repos:
 
   # yamllint
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.35.1
+    rev: v1.37.1
     hooks:
       - id: yamllint
         args: [--strict, -c, .yamllint.yml]
 
   # rstcheck
   - repo: https://github.com/rstcheck/rstcheck.git
-    rev: v6.2.4
+    rev: v6.2.5
     hooks:
       - id: rstcheck
         additional_dependencies:
@@ -78,11 +78,11 @@ repos:
         language: python
         entry: ./tools/hooks/sync_dependencies.py
         files: '^(pyproject.toml|tools/hooks/sync_dependencies.py)$'
-        additional_dependencies: ["mne==1.9.0"]
+        additional_dependencies: ["mne==1.10.0"]
 
   # zizmor
   - repo: https://github.com/woodruffw/zizmor-pre-commit
-    rev: v1.3.1
+    rev: v1.11.0
     hooks:
       - id: zizmor