Merge pull request #986 from microbiomedata/985-bump-nmdc-schema-package-to-version-1170

Bump `nmdc-schema` to version `11.7.0` and synchronize transitive dependencies

Author: eecavanna

requirements/dev.txt

@@ -4,7 +4,7 @@
 #
 #    pip-compile --allow-unsafe --output-file=requirements/dev.txt --strip-extras requirements/dev.in
 #
-attrs==25.2.0
+attrs==25.3.0
     # via
     #   -c /code/requirements/main.txt
     #   cattrs
@@ -15,53 +15,54 @@ black==25.1.0
     # via -r requirements/dev.in
 build==1.2.2.post1
     # via pip-tools
-cattrs==24.1.2
+cattrs==24.1.3
     # via
     #   -c /code/requirements/main.txt
     #   requests-cache
-certifi==2025.1.31
+certifi==2025.4.26
     # via
     #   -c /code/requirements/main.txt
     #   requests
 cffi==1.17.1
     # via
     #   -c /code/requirements/main.txt
     #   cryptography
-charset-normalizer==3.4.1
+charset-normalizer==3.4.2
     # via
     #   -c /code/requirements/main.txt
     #   requests
-click==8.1.8
+click==8.2.0
     # via
     #   -c /code/requirements/main.txt
     #   black
     #   pip-tools
-coverage==7.6.12
+coverage==7.8.0
     # via
     #   -r requirements/dev.in
     #   pytest-cov
-cryptography==44.0.2
+cryptography==44.0.3
     # via
     #   -c /code/requirements/main.txt
     #   secretstorage
 docutils==0.21.2
     # via readme-renderer
-exceptiongroup==1.2.2
+exceptiongroup==1.3.0
     # via
     #   -c /code/requirements/main.txt
     #   cattrs
     #   pytest
-flake8==7.1.2
+flake8==7.2.0
     # via -r requirements/dev.in
 id==1.5.0
     # via twine
 idna==3.10
     # via
     #   -c /code/requirements/main.txt
     #   requests
-importlib-metadata==8.6.1
+    #   url-normalize
+importlib-metadata==8.7.0
     # via keyring
-iniconfig==2.0.0
+iniconfig==2.1.0
     # via
     #   -c /code/requirements/main.txt
     #   pytest
@@ -89,15 +90,15 @@ mdurl==0.1.2
     # via
     #   -c /code/requirements/main.txt
     #   markdown-it-py
-more-itertools==10.6.0
+more-itertools==10.7.0
     # via
     #   jaraco-classes
     #   jaraco-functools
-mypy-extensions==1.0.0
+mypy-extensions==1.1.0
     # via black
 nh3==0.2.21
     # via readme-renderer
-packaging==24.2
+packaging==25.0
     # via
     #   -c /code/requirements/main.txt
     #   black
@@ -110,7 +111,7 @@ pathspec==0.12.1
     #   black
 pip-tools==7.4.1
     # via -r requirements/dev.in
-platformdirs==4.3.6
+platformdirs==4.3.8
     # via
     #   -c /code/requirements/main.txt
     #   black
@@ -119,13 +120,13 @@ pluggy==1.5.0
     # via
     #   -c /code/requirements/main.txt
     #   pytest
-pycodestyle==2.12.1
+pycodestyle==2.13.0
     # via flake8
 pycparser==2.22
     # via
     #   -c /code/requirements/main.txt
     #   cffi
-pyflakes==3.2.0
+pyflakes==3.3.2
     # via flake8
 pygments==2.19.1
     # via
@@ -143,9 +144,9 @@ pytest==8.3.5
     #   pytest-asyncio
     #   pytest-cov
     #   pytest-mock
-pytest-asyncio==0.25.3
+pytest-asyncio==0.26.0
     # via -r requirements/dev.in
-pytest-cov==6.0.0
+pytest-cov==6.1.1
     # via -r requirements/dev.in
 pytest-mock==3.14.0
     # via -r requirements/dev.in
@@ -177,10 +178,6 @@ rich==13.9.4
     #   twine
 secretstorage==3.3.3
     # via keyring
-six==1.17.0
-    # via
-    #   -c /code/requirements/main.txt
-    #   url-normalize
 tomli==2.2.1
     # via
     #   -c /code/requirements/main.txt
@@ -191,17 +188,18 @@ tomli==2.2.1
     #   pytest
 twine==6.1.0
     # via -r requirements/dev.in
-typing-extensions==4.12.2
+typing-extensions==4.13.2
     # via
     #   -c /code/requirements/main.txt
     #   black
     #   cattrs
+    #   exceptiongroup
     #   rich
-url-normalize==1.4.3
+url-normalize==2.2.1
     # via
     #   -c /code/requirements/main.txt
     #   requests-cache
-urllib3==2.3.0
+urllib3==2.4.0
     # via
     #   -c /code/requirements/main.txt
     #   requests
@@ -213,11 +211,11 @@ zipp==3.21.0
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:
-pip==25.0.1
+pip==25.1.1
     # via
     #   -r requirements/dev.in
     #   pip-tools
-setuptools==76.0.0
+setuptools==80.4.0
     # via
     #   -c /code/requirements/main.txt
     #   -r requirements/dev.in

requirements/main.in

@@ -42,7 +42,7 @@ mkdocs-jupyter
 mkdocs-material
 mkdocs-mermaid2-plugin
 motor
-nmdc-schema==11.6.1
+nmdc-schema==11.7.0
 openpyxl
 pandas
 passlib[bcrypt]