Bioinformatics Group @ SMU

All

97 repositories

aplotExtra
Public
Creating composite plot using 'aplot'
R
•6•8•0•0•Updated May 29, 2025May 29, 2025
sclet
Public
A Lightweight Toolkit for Single-Cell Data Analysis
R
•7•7•0•1•Updated May 29, 2025May 29, 2025
ProjectYulab
Public
⏭️ Small coding tasks that enable you to participate in our development
3•32•20•0•Updated May 28, 2025May 28, 2025
yulab-smu.github.io
Public
🏠 Homepage for YuLab-SMU
HTML
•5•12•0•0•Updated May 26, 2025May 26, 2025
BMplot
Public
Base Modification Visualization
R
•4•4•0•0•Updated May 22, 2025May 22, 2025
fanyi
Public
Translate Words or Sentences via Online Translators
R
•7•52•11•0•Updated May 8, 2025May 8, 2025
ggtangle
Public
Draw Network with Data
R
•0•8•0•0•Updated Apr 30, 2025Apr 30, 2025
TCMDATA
Public
R
•2•3•0•1•Updated Apr 30, 2025Apr 30, 2025
wikiprofiler
Public
R
•4•5•0•1•Updated Apr 30, 2025Apr 30, 2025
enrichplot
Public
Visualization of Functional Enrichment Result
visualization pathway-analysis enrichment-analysis
R
•74•243•119•2•Updated Apr 29, 2025Apr 29, 2025
SVP
Public
R
•
GNU General Public License v3.0
•0•9•0•0•Updated Apr 17, 2025Apr 17, 2025
ggtreeExtra
Public
🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
R
•
GNU General Public License v3.0
•17•93•12•0•Updated Apr 17, 2025Apr 17, 2025
MicrobiotaProcess
Public
🦠 A comprehensive R package for deep mining microbiome
microbiome microbiome-analysis microbiome-data rstats
R
•37•188•93•0•Updated Apr 17, 2025Apr 17, 2025
treeio
Public
🌱 Base Classes and Functions for Phylogenetic Tree Input and Output
parser exporter phylogenetic-trees
R
•26•102•27•2•Updated Apr 17, 2025Apr 17, 2025
seqcombo
Public
Visualization tool for genetic reassortment
R
•7•21•1•0•Updated Apr 17, 2025Apr 17, 2025
meshes
Public
🩺 MeSH Enrichment and Semantic analyses
semantic-similarity medical-subject-headings enrichment-analysis
R
•4•12•2•1•Updated Apr 17, 2025Apr 17, 2025
ggtreeSpace
Public
🕸️Exploring phylomorphospace using 'ggtree'
R
•2•5•0•0•Updated Apr 17, 2025Apr 17, 2025
ggtreeDendro
Public
Drawing 'dendrogram' using 'ggtree'
clustering dendrogram
R
•3•13•0•0•Updated Apr 17, 2025Apr 17, 2025
ggsc
Public
🧠 Visualizing Single Cell and Spatial Transcriptomics
R
•12•47•0•0•Updated Apr 17, 2025Apr 17, 2025
clusterProfiler
Public
📊 A universal enrichment tool for interpreting omics data
visualization go rstats kegg enrichment-analysis gsea
R
•260•1.1k•344•2•Updated Apr 17, 2025Apr 17, 2025
ReactomePA
Public
Reactome Pathway Analysis
enrichment-analysis reactome-pathway-analysis reactomepa
R
•11•42•16•0•Updated Apr 17, 2025Apr 17, 2025
MicrobiomeProfiler
Public
🦠 A shiny package for microbiome functional enrichment analysis
R
•8•37•0•1•Updated Apr 17, 2025Apr 17, 2025
GOSemSim
Public
⛳ GO-terms Semantic Similarity Measures
bioinformatics gene-ontology semantic-similarity
R
•26•63•14•0•Updated Apr 17, 2025Apr 17, 2025
DOSE
Public
😷 Disease Ontology Semantic and Enrichment analysis
semantic-similarity disease-ontology enrichment-analysis
R
•37•119•25•2•Updated Apr 17, 2025Apr 17, 2025
ChIPseeker
Public
🎯 ChIP peak Annotation, Comparison and Visualization
annotation comparison epigenetics chip-seq atac-seq epigenomics visualization
R
•77•234•111•0•Updated Apr 17, 2025Apr 17, 2025
ggtree
Public
🎄Visualization and annotation of phylogenetic trees
visualization ggplot2 r annotations phylogenetic-trees
R
•178•875•173•1•Updated Apr 17, 2025Apr 17, 2025
ggfun
Public
useful functions for ggplot
R
•4•18•0•0•Updated Mar 17, 2025Mar 17, 2025
yulab.utils
Public
Miscellaneous functions commonly used by 'YuLab-SMU'.
R
•10•33•1•0•Updated Mar 14, 2025Mar 14, 2025
aplot
Public
Decorate a plot with associated information
R
•16•104•10•0•Updated Feb 26, 2025Feb 26, 2025
ggbreak
Public
💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.
ggplot2 axis-break wrap-plot cut-plot ggbreak
R
•5•137•35•0•Updated Feb 4, 2025Feb 4, 2025