Where should I place a manucript project for an existing RStudio project?

[porapinz]

Description

Hello, I have an RStudio project for my thesis project. I have finished my experiment, and I want to write a journal manuscript. I have reviewed the Quarto manuscript tutorial and I have a question whether I should clone the template into the same directory of my thesis project, or a separate directory. In the manuscript, I also want to embed tables and graphs from my analysis notebook (.qmd).

[mcanouil]

_quarto.yml should be at the root of your project where Quarto can find all ipynb and qmd.
Beyong that, the structure is 100% up to you.

You should not nest Quarto projects, i.e., having _quarto.yml alongside your .Rproj file and another in a subdirectory.