diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index d29162b8..708407c7 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,16 +1,16 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v5.0.0
     hooks:
     -   id: check-yaml
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
 -   repo: https://github.com/psf/black
-    rev: 23.1.0
+    rev: 25.1.0
     hooks:
     -   id: black
 -   repo: https://github.com/pycqa/flake8
-    rev: 6.0.0
+    rev: 7.3.0
     hooks:
     -   id: flake8
         types: [file, python]
diff --git a/examples/cluster/plot_kmedoids_digits.py b/examples/cluster/plot_kmedoids_digits.py
index 8bb7ab11..10e30683 100644
--- a/examples/cluster/plot_kmedoids_digits.py
+++ b/examples/cluster/plot_kmedoids_digits.py
@@ -5,6 +5,7 @@
 In this example we compare different pairwise distance
 metrics for K-Medoids.
 """
+
 import numpy as np
 import matplotlib.pyplot as plt
 
diff --git a/examples/eigenpro/plot_eigenpro_synthetic.py b/examples/eigenpro/plot_eigenpro_synthetic.py
index 802f8a57..62696e9a 100644
--- a/examples/eigenpro/plot_eigenpro_synthetic.py
+++ b/examples/eigenpro/plot_eigenpro_synthetic.py
@@ -11,6 +11,7 @@
 the number of features exceeds 500, it begins to outperform
 SVM and shows more stability.
 """
+
 print(__doc__)
 
 import matplotlib
diff --git a/examples/kernel_approximation/plot_kernel_approximation.py b/examples/kernel_approximation/plot_kernel_approximation.py
index 6b8dab52..8b4603bd 100644
--- a/examples/kernel_approximation/plot_kernel_approximation.py
+++ b/examples/kernel_approximation/plot_kernel_approximation.py
@@ -41,6 +41,7 @@
 in :ref:`kernel_approximation`.
 
 """
+
 print(__doc__)
 
 # Author: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
diff --git a/examples/plot_clara_digits.py b/examples/plot_clara_digits.py
index a703c948..8697307a 100644
--- a/examples/plot_clara_digits.py
+++ b/examples/plot_clara_digits.py
@@ -5,6 +5,7 @@
 In this example we compare different computation time of K-Medoids and CLARA on
 the handwritten digits data.
 """
+
 import numpy as np
 import matplotlib.pyplot as plt
 import time
diff --git a/sklearn_extra/cluster/_commonnn.py b/sklearn_extra/cluster/_commonnn.py
index 8d21d9a7..d86d2bc1 100644
--- a/sklearn_extra/cluster/_commonnn.py
+++ b/sklearn_extra/cluster/_commonnn.py
@@ -1,6 +1,5 @@
 # -*- coding: utf-8 -*-
-"""Density-Based Common-Nearest-Neighbors Clustering
-"""
+"""Density-Based Common-Nearest-Neighbors Clustering"""
 
 # Author: Jan-Oliver Joswig <jan.joswig@fu-berlin.de>
 #
diff --git a/sklearn_extra/cluster/tests/test_commonnn.py b/sklearn_extra/cluster/tests/test_commonnn.py
index 757878b4..b2c23e2f 100644
--- a/sklearn_extra/cluster/tests/test_commonnn.py
+++ b/sklearn_extra/cluster/tests/test_commonnn.py
@@ -1,5 +1,4 @@
-"""Tests for common-nearest neighbour clustering
-"""
+"""Tests for common-nearest neighbour clustering"""
 
 import pickle
 
diff --git a/sklearn_extra/cluster/tests/test_k_medoids.py b/sklearn_extra/cluster/tests/test_k_medoids.py
index 30f419a0..f18925e4 100644
--- a/sklearn_extra/cluster/tests/test_k_medoids.py
+++ b/sklearn_extra/cluster/tests/test_k_medoids.py
@@ -1,4 +1,5 @@
 """Testing for K-Medoids"""
+
 import warnings
 import numpy as np
 from unittest import mock