update Mitelmandb and CIViC

Author: sigven

R/sysdata.rda

@@ -1087,7 +1087,7 @@ load_civic_biomarkers <- function(
       as.character(variant))) |>
     dplyr::mutate(gene = dplyr::if_else(
       feature_type == "Fusion",
-      as.character(variant),
+      as.character(feature_name),
       as.character(gene)
     )) |>
     set_alteration_type() |>
@@ -1173,7 +1173,7 @@ load_civic_biomarkers <- function(
     variant_consequence <- unique(vrows$variant_consequence)
     alteration_type <- unique(vrows$alteration_type)
     variant_name_primary <- unique(vrows$variant_name_primary)
-
+    
     all_aliases <- c()
 
     if (stringr::str_detect(alteration_type,"MUT")) {

data-raw/biomarker_utilities.R

@@ -213,7 +213,7 @@ biomarkers[['metadata']] <- metadata$biomarkers
 #  substr(as.character(packageVersion("pharmOncoX")),1,4),
 #  as.character(as.integer(substr(as.character(packageVersion("pharmOncoX")),5,5)) + 1))
 
-version_bump <- "2.1.0"
+version_bump <- "2.1.1"
 
 db <- list()
 db[['biomarkers']] <- biomarkers