Update dependencies and remove aeon estimators (#67)

* aeon estimator purge

* fixes

* fixes

* extras

* fixes

* fixes

* fixes

* doc

* fix

* fix

* fix

Author: MatthewMiddlehurst

.github/ISSUE_TEMPLATE/sweep.yml

@@ -4,7 +4,7 @@ on:
   push:
     branches:
       - main
-  pull_request_target:
+  pull_request:
     branches:
       - main
 
@@ -30,36 +30,13 @@ jobs:
         run: echo '${{ steps.changed-files.outputs.all_changed_files }}'
 
       # only check the full repository if PR and correctly labelled
-      - if: ${{ github.event_name == 'pull_request_target' && contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
+      - if: ${{ github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
         name: Full pre-commit
         uses: pre-commit/action@v3.0.1
         with:
           extra_args: --all-files
-      - if: ${{ github.event_name != 'pull_request_target' || !contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
+      - if: ${{ github.event_name != 'pull_request' || !contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
         name: Local pre-commit
         uses: pre-commit/action@v3.0.1
         with:
           extra_args: --files ${{ steps.changed-files.outputs.all_changed_files }}
-
-      # push fixes if pre-commit fails and PR is eligible
-      - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes')}}
-        uses: actions/create-github-app-token@v1
-        id: app-token
-        with:
-          app-id: ${{ vars.PR_APP_ID }}
-          private-key: ${{ secrets.PR_APP_KEY }}
-
-      - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes') }}
-        name: Checkout
-        uses: actions/checkout@v4
-        with:
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
-          ref: ${{ github.head_ref }}
-          token: ${{ steps.app-token.outputs.token }}
-
-      - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes')}}
-        name: Push pre-commit fixes
-        uses: stefanzweifel/git-auto-commit-action@v5
-        with:
-          commit_message: Automatic `pre-commit` fixes
-          commit_user_name: tsml-actions-bot[bot]

.github/workflows/pr_opened.yml

@@ -1,6 +1,5 @@
 [![github-actions-release](https://img.shields.io/github/actions/workflow/status/time-series-machine-learning/tsml-py/release.yml?logo=github&label=build%20%28release%29)](https://github.com/time-series-machine-learning/tsml-py/actions/workflows/release.yml)
 [![github-actions-main](https://img.shields.io/github/actions/workflow/status/time-series-machine-learning/tsml-py/periodic_tests.yml?logo=github&branch=main&label=build%20%28main%29)](https://github.com/time-series-machine-learning/tsml-py/actions/workflows/periodic_tests.yml)
-[![codecov](https://img.shields.io/codecov/c/github/time-series-machine-learning/tsml-py?label=codecov&logo=codecov)](https://codecov.io/gh/time-series-machine-learning/tsml-py)
 [![pypi](https://img.shields.io/pypi/v/tsml?logo=pypi&color=blue)](https://pypi.org/project/tsml/)
 [![!conda](https://img.shields.io/conda/vn/conda-forge/tsml?logo=anaconda&color=blue)](https://anaconda.org/conda-forge/tsml)
 [![python-versions](https://img.shields.io/pypi/pyversions/tsml?logo=python)](https://www.python.org/)
@@ -9,10 +8,10 @@
 
 # tsml-py
 
-A toolkit for time series machine learning algorithms.
+A toolkit for in-development time series machine learning algorithms.
 
 Please see [`tsml_eval`](https://github.com/time-series-machine-learning/tsml-eval) and
-[`aeon`](https://github.com/aeon-toolkit/aeon) for more developed packages. This package
+[`aeon`](https://github.com/aeon-toolkit/aeon) for more developed and stable packages. This package
 is more of a sandbox for testing out new ideas and algorithms. It may contain some
 algorithms and implementations that are not available in the other toolkits.
 
@@ -28,4 +27,5 @@ pip install tsml
 
 ## Acknowledgements
 
-This work is supported by the UK Engineering and Physical Sciences Research Council (EPSRC) EP/W030756/1
+This work is supported by the UK Engineering and Physical Sciences Research Council
+(EPSRC) EP/W030756/1