From 39d5a767fa3a756f439759cd97cd91d4a62754b4 Mon Sep 17 00:00:00 2001 From: Tobey Carman Date: Thu, 4 Apr 2024 22:17:27 -0800 Subject: [PATCH 1/5] Change sphinx Example Experiment 0 to use demo data rather than from input-catalog. --- .../examples_and_tutorials/basic_model_run.rst | 4 +++- .../example_experiment_0.rst | 14 +++++++------- 2 files changed, 10 insertions(+), 8 deletions(-) diff --git a/docs_src/sphinx/source/examples_and_tutorials/basic_model_run.rst b/docs_src/sphinx/source/examples_and_tutorials/basic_model_run.rst index 7cc2258d2..a63ec8d8a 100644 --- a/docs_src/sphinx/source/examples_and_tutorials/basic_model_run.rst +++ b/docs_src/sphinx/source/examples_and_tutorials/basic_model_run.rst @@ -541,7 +541,9 @@ folder and make some adjustments to the configuration file for the run. Using the one-off command style, run the script. For this case we just arbitrarily select a dataset from your input catalog. Don't worry if you have a -different dataset from the example shown here. +different dataset from the example shown here. If you don't have any input +datasets in your input-catalog, then use the demo-data that is included with the +repository. .. code:: bash diff --git a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst index 175bab176..5c65a63eb 100644 --- a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst +++ b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst @@ -50,7 +50,7 @@ Here we have designed a small experiment with answers to the unknowns posed in * - | What spatial (geographic) area you want | to run? - | Toolik, pixels (0,0), (1,1), (2,2) - | ``/data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/`` + | ``/work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/`` * - What variables you want to output? - | GPP: monthly, by PFT | RH, RG, RM: monthly @@ -95,7 +95,7 @@ Here we have designed a small experiment with answers to the unknowns posed in .. code:: - $ ./scripts/setup_working_directory.py --input-data-path /data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10 /data/workflows/exp0_jan26_test + $ ./scripts/setup_working_directory.py --input-data-path /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/ /data/workflows/exp0_jan26_test $ cd /data/workflows/exp0_jan26_test/ $ outspec.py config/output_spec.csv --on RH m $ outspec.py config/output_spec.csv --on RG m @@ -175,16 +175,16 @@ information is used to set the number of transient and scenario years to run. .. code:: - $ ncdump -h /data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/historic-climate.nc | grep "time:units" + $ ncdump -h /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/historic-climate.nc | grep "time:units" time:units = "days since 1901-1-1 0:0:0" ; - $ ncdump -h /data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/projected-climate.nc | grep "time:units" + $ ncdump -h /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/projected-climate.nc | grep "time:units" time:units = "days since 2016-1-1 0:0:0" ; - $ ncdump -h /data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/historic-climate.nc | grep "time\ =\ " + $ ncdump -h /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/historic-climate.nc | grep "time\ =\ " time = UNLIMITED ; // (1380 currently) - $ ncdump -h /data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/projected-climate.nc | grep "time\ =\ " + $ ncdump -h /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/projected-climate.nc | grep "time\ =\ " time = UNLIMITED ; // (1020 currently) So ``1380/12 = 115``. Looks like 115 years for the historic and ``1020/85 = @@ -208,7 +208,7 @@ information is used to set the number of transient and scenario years to run. args = { 'command': 'climate-ts-plot', - 'input_folder': '/data/input-catalog/cru-ts40_ar5_rcp85_ncar-ccsm4_TOOLIK_FIELD_STATION_10x10/', + 'input_folder': '/work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/', 'stitch': False, 'type': 'spatial-temporal-summary', } From eba90e306c3d546665f1c9c888d43addf7923858 Mon Sep 17 00:00:00 2001 From: Tobey Carman Date: Sun, 5 May 2024 05:40:27 +0000 Subject: [PATCH 2/5] Change paths so that the experiment 0 is stored in the testing data rather than the general workflows location. This allows the whole run to be kept under version control and also allows the documentation examples (jupyter execute blocks) to run without waiting for the model to run. --- .../example_experiment_0.rst | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst index 5c65a63eb..dcef6c2ad 100644 --- a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst +++ b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst @@ -46,7 +46,7 @@ Here we have designed a small experiment with answers to the unknowns posed in - **Answer** * - | Where on your computer you want to store | your model run(s)? - - ``/data/workflows/exp0_jan26_test`` + - ``/work/testing-data/docs/example_experiment_0/`` * - | What spatial (geographic) area you want | to run? - | Toolik, pixels (0,0), (1,1), (2,2) @@ -93,10 +93,10 @@ Here we have designed a small experiment with answers to the unknowns posed in .. collapse:: Example commands for setting up :class: working - .. code:: + .. code:: - $ ./scripts/setup_working_directory.py --input-data-path /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/ /data/workflows/exp0_jan26_test - $ cd /data/workflows/exp0_jan26_test/ + $ ./scripts/setup_working_directory.py --input-data-path /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/ /work/testing-data/docs/example_experiment_0/ + $ cd /work/testing-data/docs/example_experiment_0/ $ outspec.py config/output_spec.csv --on RH m $ outspec.py config/output_spec.csv --on RG m $ outspec.py config/output_spec.csv --on RM m @@ -156,7 +156,7 @@ differently, please adjust your paths accordingly.** # This lets us work with shorter paths relative to the experiment # directory - os.chdir('/data/workflows/exp0_jan26_test') + os.chdir('/work/testing-data/docs/example_experiment_0/') @@ -250,10 +250,10 @@ ranges: [1990-1999], [2040-2049], [2090-2099]. .. code:: ### Change into the experiment directory - cd /data/workflows/exp0_jan26_test + cd /work/testing-data/docs/example_experiment_0/ ### Create a synthesis directory to store all the summary stats - mkdir /data/workflows/exp0_jan26_test/synthesis + mkdir /work/testing-data/docs/example_experiment_0//synthesis ### Compute the decadal means of vegetation carbon stocks ncwa -O -d time,89,98 -d x,0 -d y,0 -y avg -v VEGC output/VEGC_yearly_tr.nc synthesis/VEGC_1990_1999.nc @@ -373,10 +373,10 @@ simulations. Indicate how you formulated NEE. .. code:: ### Change into the experiment directory - cd /data/workflows/exp0_jan26_test + cd /work/testing-data/docs/example_experiment_0/ ### Create a synthesis directory to store all the summary stats - mkdir /data/workflows/exp0_jan26_test/synthesis + mkdir /work/testing-data/docs/example_experiment_0/ ### Sum up the GPP across PFTs ncwa -O -h -v GPP -a pft -y total output/GPP_monthly_tr.nc synthesis/GPP_monthly_tr.nc From f6faf7e87910832a2af6eae2db84b756daf2f78a Mon Sep 17 00:00:00 2001 From: Tobey Carman Date: Sun, 5 May 2024 05:41:40 +0000 Subject: [PATCH 3/5] Add commented out jupyter execute block for developer use when you need to actually run the model and re-generate the outputs for some reason. --- .../example_experiment_0.rst | 48 +++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst index dcef6c2ad..e3346b31f 100644 --- a/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst +++ b/docs_src/sphinx/source/examples_and_tutorials/example_experiment_0.rst @@ -90,6 +90,54 @@ Here we have designed a small experiment with answers to the unknowns posed in by-layer resolution is enforced internally in the C++ part of the model. +.. collapse:: Developer commands for working on documentation + + Uncomment the following jupyter execute block if you need to actually run the + model for this experiment. This is useful if you are a developer working on + the documentation. Otherwise you can assume that the outputs needed for the + remainder of the exercise are in the ``testing-data/docs/example_experiment0`` + directory. + + .. jupyter-execute:: + + # import os + # import subprocess + # import shutil + # + # import setup_working_directory + # import outspec + # import runmask + # + # shutil.rmtree('/work/testing-data/docs/example_experiment_0/') + # + # args = '--input-data-path /work/demo-data/cru-ts40_ar5_rcp85_ncar-ccsm4_toolik_field_station_10x10/ /work/testing-data/docs/example_experiment_0/' + # setup_working_directory.cmdline_entry(args.split(' ')) + # + # os.chdir('/work/testing-data/docs/example_experiment_0/') + # + # outspec.cmdline_entry('config/output_spec.csv --on RH m'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on RG m'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on RM m'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on TLAYER l m'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on GPP m p'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on VEGC y'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on ALD y'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on CMTNUM y'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on SHLWC y l'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on SHLWDZ y l'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on DEEPC y l'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on DEEPDZ y l'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on MINEC y l'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on LAYERDZ y'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on LAYERDEPTH y'.split(' ')) + # outspec.cmdline_entry('config/output_spec.csv --on LAYERTYPE y'.split(' ')) + # + # runmask.cmdline_entry('--reset run-mask.nc'.split(' ')) + # runmask.cmdline_entry('--yx 0 0 run-mask.nc'.split(' ')) + # + # subprocess.call('dvmdostem -l fatal --force-cmt 5 -p 100 -s 250 -e 1000 -t 115 -n 85'.split(' ')) + + .. collapse:: Example commands for setting up :class: working From 2486bd4d3ae88f3da375d891bf3c95b6db8d6680 Mon Sep 17 00:00:00 2001 From: Tobey Carman Date: Sun, 5 May 2024 05:43:09 +0000 Subject: [PATCH 4/5] Add all the configuration and output for the example experiment 0 --- testing-data/docs/example_experiment_0/ALD_SAMPLE.png | 3 +++ testing-data/docs/example_experiment_0/NEE_SAMPLE.png | 3 +++ .../example_experiment_0/calibration/calibration_targets.py | 3 +++ .../example_experiment_0/config/calibration_directives.txt | 3 +++ testing-data/docs/example_experiment_0/config/config.js | 3 +++ testing-data/docs/example_experiment_0/config/output_spec.csv | 3 +++ testing-data/docs/example_experiment_0/output/ALD_yearly_sc.nc | 3 +++ testing-data/docs/example_experiment_0/output/ALD_yearly_sp.nc | 3 +++ testing-data/docs/example_experiment_0/output/ALD_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/CMTNUM_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/CMTNUM_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/CMTNUM_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/DEEPC_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/DEEPC_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/DEEPC_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/DEEPDZ_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/DEEPDZ_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/DEEPDZ_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/GPP_monthly_sc.nc | 3 +++ .../docs/example_experiment_0/output/GPP_monthly_sp.nc | 3 +++ .../docs/example_experiment_0/output/GPP_monthly_tr.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDEPTH_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDEPTH_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDEPTH_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDZ_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDZ_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/LAYERDZ_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/LAYERTYPE_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/LAYERTYPE_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/LAYERTYPE_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/MINEC_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/MINEC_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/MINEC_yearly_tr.nc | 3 +++ testing-data/docs/example_experiment_0/output/RG_monthly_sc.nc | 3 +++ testing-data/docs/example_experiment_0/output/RG_monthly_sp.nc | 3 +++ testing-data/docs/example_experiment_0/output/RG_monthly_tr.nc | 3 +++ testing-data/docs/example_experiment_0/output/RH_monthly_sc.nc | 3 +++ testing-data/docs/example_experiment_0/output/RH_monthly_sp.nc | 3 +++ testing-data/docs/example_experiment_0/output/RH_monthly_tr.nc | 3 +++ testing-data/docs/example_experiment_0/output/RM_monthly_sc.nc | 3 +++ testing-data/docs/example_experiment_0/output/RM_monthly_sp.nc | 3 +++ testing-data/docs/example_experiment_0/output/RM_monthly_tr.nc | 3 +++ .../docs/example_experiment_0/output/SHLWC_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/SHLWC_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/SHLWC_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/SHLWDZ_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/SHLWDZ_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/SHLWDZ_yearly_tr.nc | 3 +++ .../docs/example_experiment_0/output/TLAYER_monthly_sc.nc | 3 +++ .../docs/example_experiment_0/output/TLAYER_monthly_sp.nc | 3 +++ .../docs/example_experiment_0/output/TLAYER_monthly_tr.nc | 3 +++ .../docs/example_experiment_0/output/VEGC_yearly_sc.nc | 3 +++ .../docs/example_experiment_0/output/VEGC_yearly_sp.nc | 3 +++ .../docs/example_experiment_0/output/VEGC_yearly_tr.nc | 3 +++ testing-data/docs/example_experiment_0/output/restart-eq.nc | 3 +++ testing-data/docs/example_experiment_0/output/restart-pr.nc | 3 +++ testing-data/docs/example_experiment_0/output/restart-sc.nc | 3 +++ testing-data/docs/example_experiment_0/output/restart-sp.nc | 3 +++ testing-data/docs/example_experiment_0/output/restart-tr.nc | 3 +++ testing-data/docs/example_experiment_0/output/run_status.nc | 3 +++ .../docs/example_experiment_0/parameters/cmt_bgcsoil.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_bgcvegetation.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_calparbgc.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_dimground.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_dimvegetation.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_envcanopy.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_envground.txt | 3 +++ .../docs/example_experiment_0/parameters/cmt_firepar.txt | 3 +++ testing-data/docs/example_experiment_0/run-mask.nc | 3 +++ 69 files changed, 207 insertions(+) create mode 100644 testing-data/docs/example_experiment_0/ALD_SAMPLE.png create mode 100644 testing-data/docs/example_experiment_0/NEE_SAMPLE.png create mode 100644 testing-data/docs/example_experiment_0/calibration/calibration_targets.py create mode 100644 testing-data/docs/example_experiment_0/config/calibration_directives.txt create mode 100644 testing-data/docs/example_experiment_0/config/config.js create mode 100644 testing-data/docs/example_experiment_0/config/output_spec.csv create mode 100644 testing-data/docs/example_experiment_0/output/ALD_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/ALD_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/ALD_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/CMTNUM_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/CMTNUM_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/CMTNUM_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPC_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPC_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPC_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPDZ_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPDZ_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/DEEPDZ_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/GPP_monthly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/GPP_monthly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/GPP_monthly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDEPTH_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDEPTH_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDEPTH_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDZ_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDZ_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERDZ_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERTYPE_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERTYPE_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/LAYERTYPE_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/MINEC_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/MINEC_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/MINEC_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/RG_monthly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/RG_monthly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/RG_monthly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/RH_monthly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/RH_monthly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/RH_monthly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/RM_monthly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/RM_monthly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/RM_monthly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWC_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWC_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWC_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWDZ_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWDZ_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/SHLWDZ_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/TLAYER_monthly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/TLAYER_monthly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/TLAYER_monthly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/VEGC_yearly_sc.nc create mode 100644 testing-data/docs/example_experiment_0/output/VEGC_yearly_sp.nc create mode 100644 testing-data/docs/example_experiment_0/output/VEGC_yearly_tr.nc create mode 100644 testing-data/docs/example_experiment_0/output/restart-eq.nc create mode 100644 testing-data/docs/example_experiment_0/output/restart-pr.nc create mode 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file mode 100644 index 000000000..a238f267d --- /dev/null +++ b/testing-data/docs/example_experiment_0/run-mask.nc @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e8b763dfa993b356f3aa4b67fbf667089c9d86056df1c6a8aac6c6bafcf58659 +size 14793 From 81074a8effca3bd753326dafaecd223b462bc49c Mon Sep 17 00:00:00 2001 From: Tobey Carman Date: Thu, 20 Jun 2024 13:54:49 -0800 Subject: [PATCH 5/5] Add note about git lfs and obtaining the test data. --- docs_src/sphinx/source/software_development_info.rst | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/docs_src/sphinx/source/software_development_info.rst b/docs_src/sphinx/source/software_development_info.rst index db8b0b698..f14918061 100644 --- a/docs_src/sphinx/source/software_development_info.rst +++ b/docs_src/sphinx/source/software_development_info.rst @@ -14,6 +14,14 @@ Dev Info This chapter should include all the useful information that you will need to make contributions to the ``dvmdostem`` project. +.. important:: + + In order to keep the base repository size from growing out of control, the + testing and sample data is tracked using `Git LFS `_. If + you need to use the testing data (i.e. to run the tests, or to build the + documentation from source) then you should install Git LFS and run ``git lfs + pull`` to make sure that the actual data is downloaded. + ****************************** Languages, Software Structure ******************************