A Strategy to Analyze Plant Extracts Taste In Depth.
As the package is not (yet) available on CRAN, you will need to install with:
install.packages(
"sapid",
repos = c(
"https://adafede.r-universe.dev",
"https://bioc.r-universe.dev",
"https://cloud.r-project.org"
)
)Article: https://doi.org/10.1016/j.crfs.2025.101043
According to which steps you used, please give credit to the authors of the tools/resources used.
General: https://doi.org/10.1038/s41587-023-01690-2
General: https://doi.org/10.1038/s41592-019-0344-8
- CSI:FingerId: https://doi.org/10.1073/pnas.1509788112
- ZODIAC: https://doi.org/10.1038/s42256-020-00234-6
- CANOPUS: https://doi.org/10.1038/s41587-020-0740-8
- COSMIC: https://doi.org/10.1038/s41587-021-01045-9
General: https://doi.org/10.7554/eLife.70780
General: https://doi.org/10.1021/acs.analchem.5b04804
General: https://doi.org/10.3389/fpls.2019.01329
- NPClassifier: https://doi.org/10.1021/acs.jnatprod.1c00399
| Package | Version | Citation |
|---|---|---|
| AlpsNMR | 4.11.0 | Madrid-Gambin et al. (2020) |
| base | 4.5.1 | R Core Team (2025) |
| BiocManager | 1.30.26 | Morgan and Ramos (2025) |
| BiocVersion | 3.22.0 | Morgan (2025) |
| BSDA | 1.2.2 | Arnholt and Evans (2023) |
| cascade | 0.0.0.9001 | Rutz and Wolfender (2023); Rutz (2025) |
| dendextend | 1.19.1 | Galili (2015) |
| FactoMineR | 2.12 | Lê, Josse, and Husson (2008) |
| ggbump | 0.1.0 | Sjoberg (2020) |
| ggpubr | 0.6.1 | Kassambara (2025) |
| ggraph | 2.2.2 | Pedersen (2025) |
| ggrepel | 0.9.6 | Slowikowski (2024) |
| igraph | 2.1.4 | Csardi and Nepusz (2006); Csárdi et al. (2025) |
| khroma | 1.16.0 | Frerebeau (2025) |
| knitr | 1.50 | Xie (2014); Xie (2015); Xie (2025) |
| NMRphasing | 1.0.7 | Jiang (2025) |
| pkgload | 1.4.1 | Wickham et al. (2025) |
| rmarkdown | 2.29 | Xie, Allaire, and Grolemund (2018); Xie, Dervieux, and Riederer (2020); Allaire et al. (2024) |
| scales | 1.4.0 | Wickham, Pedersen, and Seidel (2025) |
| SensoMineR | 1.28 | Husson, Le, and Cadoret (2025) |
| stringi | 1.8.7 | Gagolewski (2022) |
| testthat | 3.2.3 | Wickham (2011) |
| tidytable | 0.11.2 | Fairbanks (2024) |
| tidyverse | 2.0.0 | Wickham et al. (2019) |
| treemapify | 2.5.6 | Wilkins (2023) |
Allaire, JJ, Yihui Xie, Christophe Dervieux, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, et al. 2024. rmarkdown: Dynamic Documents for r. https://github.com/rstudio/rmarkdown.
Arnholt, Alan T., and Ben Evans. 2023. BSDA: Basic Statistics and Data Analysis. https://doi.org/10.32614/CRAN.package.BSDA.
Csardi, Gabor, and Tamas Nepusz. 2006. “The Igraph Software Package for Complex Network Research.” InterJournal Complex Systems: 1695. https://igraph.org.
Csárdi, Gábor, Tamás Nepusz, Vincent Traag, Szabolcs Horvát, Fabio Zanini, Daniel Noom, and Kirill Müller. 2025. igraph: Network Analysis and Visualization in r. https://doi.org/10.5281/zenodo.7682609.
Fairbanks, Mark. 2024. tidytable: Tidy Interface to “data.table”. https://doi.org/10.32614/CRAN.package.tidytable.
Frerebeau, Nicolas. 2025. khroma: Colour Schemes for Scientific Data Visualization. Pessac, France: Université Bordeaux Montaigne. https://doi.org/10.5281/zenodo.1472077.
Gagolewski, Marek. 2022. “stringi: Fast and Portable Character String Processing in R.” Journal of Statistical Software 103 (2): 1–59. https://doi.org/10.18637/jss.v103.i02.
Galili, Tal. 2015. “dendextend: An r Package for Visualizing, Adjusting, and Comparing Trees of Hierarchical Clustering.” Bioinformatics. https://doi.org/10.1093/bioinformatics/btv428.
Husson, Francois, Sebastien Le, and Marine Cadoret. 2025. SensoMineR: Sensory Data Analysis. https://doi.org/10.32614/CRAN.package.SensoMineR.
Jiang, Aixiang. 2025. NMRphasing: Phase Error Correction and Baseline Correction for One Dimensional (“1D”) “NMR” Data. https://doi.org/10.32614/CRAN.package.NMRphasing.
Kassambara, Alboukadel. 2025. ggpubr: “ggplot2” Based Publication Ready Plots. https://doi.org/10.32614/CRAN.package.ggpubr.
Lê, Sébastien, Julie Josse, and François Husson. 2008. “FactoMineR: A Package for Multivariate Analysis.” Journal of Statistical Software 25 (1): 1–18. https://doi.org/10.18637/jss.v025.i01.
Madrid-Gambin, Francisco, Oller-Moreno, Sergio, Fernandez, Luis, Bartova, et al. 2020. “AlpsNMR: An r Package for Signal Processing of Fully Untargeted NMR-Based Metabolomics.” Bioinformatics, January. https://doi.org/10.1093/bioinformatics/btaa022.
Morgan, Martin. 2025. BiocVersion: Set the Appropriate Version of Bioconductor Packages. https://doi.org/10.18129/B9.bioc.BiocVersion.
Morgan, Martin, and Marcel Ramos. 2025. BiocManager: Access the Bioconductor Project Package Repository. https://doi.org/10.32614/CRAN.package.BiocManager.
Pedersen, Thomas Lin. 2025. ggraph: An Implementation of Grammar of Graphics for Graphs and Networks. https://doi.org/10.32614/CRAN.package.ggraph.
R Core Team. 2025. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Rutz, Adriano. 2025. cascade: Contextualizing Untargeted Annotation with Semi-Quantitative Charged Aerosol Detection for Pertinent Characterization of Natural Extracts.
Rutz, Adriano, and Jean-Luc Wolfender. 2023. “Automated Composition Assessment of Natural Extracts: Untargeted Mass Spectrometry-Based Metabolite Profiling Integrating Semiquantitative Detection.” Journal of Agricultural and Food Chemistry 71 (46). https://doi.org/10.1021/acs.jafc.3c03099.
Sjoberg, David. 2020. ggbump: Bump Chart and Sigmoid Curves. https://doi.org/10.32614/CRAN.package.ggbump.
Slowikowski, Kamil. 2024. ggrepel: Automatically Position Non-Overlapping Text Labels with “ggplot2”. https://doi.org/10.32614/CRAN.package.ggrepel.
Wickham, Hadley. 2011. “testthat: Get Started with Testing.” The R Journal 3: 5–10. https://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf.
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. “Welcome to the tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.
Wickham, Hadley, Winston Chang, Jim Hester, and Lionel Henry. 2025. pkgload: Simulate Package Installation and Attach. https://doi.org/10.32614/CRAN.package.pkgload.
Wickham, Hadley, Thomas Lin Pedersen, and Dana Seidel. 2025. scales: Scale Functions for Visualization. https://doi.org/10.32614/CRAN.package.scales.
Wilkins, David. 2023. treemapify: Draw Treemaps in “ggplot2”. https://doi.org/10.32614/CRAN.package.treemapify.
Xie, Yihui. 2014. “knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC.
———. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.org/knitr/.
———. 2025. knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.org/knitr/.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020. R Markdown Cookbook. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook.
