MCnebula2

News: A comprehensive introduction to the MCnebula workflow and R package 'MCnebula2': https://mcnebula.netlify.app/.

MCnebula algorithm integrated in S4 system of R. Use help(MCnebula2) to see more details (after installation).

Installation

In general, the following code will install the dependent or imported packages as well as the MCnebula2 package:

remotes::install_github("Cao-lab-zcmu/MCnebula2")

However, packages that do not exist in CRAN but exist in Bioconductor may not be installed automatically, in which case they may need to be installed first:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
  install.packages("BiocManager")
}
BiocManager::install(c("BiocStyle", "ChemmineOB"))

If you are using Mac ARM64, please install open-babel first.

brew install open-babel