Feat/doc #185
Feat/doc #185
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WalkthroughThe README.md was extensively rewritten to provide a comprehensive project overview, including new sections on motivation, research data management, and data sharing concepts. Additionally, a new documentation file, docs/jzfs-spec.md, was added to explain the challenges in data ecosystems and the rationale for JZFS, without altering any code or public entities. Changes
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Actionable comments posted: 3
🧹 Nitpick comments (7)
docs/jzfs-spec.md (3)
2-2: Trim the trailing space and use sentence-case for the titleThe extra blank before the question mark looks sloppy, and sentence-case titles are conventional in technical docs.
-# Why JZFS for Data ? +# Why JZFS for data?
24-34: Unify English variant and tighten wording
organisation(s)mixes UK spelling into an otherwise US-centric text and one long sentence would benefit from commas.-2. Consistent and increasing desire to Decentralise - ...the organisation feels the pressure... - * Not enough skilled professionals... - * Not enough professionals or budget... - * Not enough experts to help train... -... -In essence, Autonomy instead should become the higher priority over Decentralisation if that is the ultimate objective. +2. Consistent and increasing desire to decentralize + ...the organization feels the pressure... + * Insufficient skilled professionals... + * Insufficient budget to disrupt existing processes... + * Insufficient experts to train and onboard during migration. +... +In essence, autonomy—not decentralization—should take priority if that is the objective.
36-38: Promote the DDP paragraph to a proper heading and link it correctly-Why - Data Developer Platform -https://datadeveloperplatform.org/why_ddp_for_data/#why-build-a-ddp-for-data-products +## Data Developer Platform +[Why build a DDP for data products?](https://datadeveloperplatform.org/why_ddp_for_data/#why-build-a-ddp-for-data-products)README.md (4)
13-13: Remove double spaces after blockquote markerThis violates
markdownlintrule MD027.-> Delivers distributed data management system that keeps track of your data from code to PB scale dataset and ensures reproducibility. +> Delivers a distributed data-management system that keeps track of your data from code to PB-scale datasets and ensures reproducibility.
80-82: Fix spelling of the section header-### Reserach Data Management +### Research Data Management
113-113: Typo in “DataHub” description-Our central use case is the DataHub(Like Github, buf for Data), +Our central use case is the DataHub (like GitHub, but for data),
124-125: Possessive pronoun & wordiness-Each node in the network is maintaining it's own copy, its history and coordinating via one or many remotes. -If a remote you trust gets corrupted, you have the ability to roll back to a previous good state and switch to a new remote. +Each node in the network maintains its own copy and history, coordinating via one or many remotes. +If a trusted remote becomes corrupted, you can roll back to a previous good state and switch to a new remote.
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⛔ Files ignored due to path filters (4)
docs/jzfs-joint-management.pngis excluded by!**/*.pngdocs/jzfs-logo-words.pngis excluded by!**/*.pngdocs/jzfs-logo.pngis excluded by!**/*.pngdocs/jzfs-research-flow.pngis excluded by!**/*.png
📒 Files selected for processing (2)
README.md(3 hunks)docs/jzfs-spec.md(1 hunks)
🧰 Additional context used
🪛 LanguageTool
docs/jzfs-spec.md
[uncategorized] ~4-~4: Possible missing comma found.
Context: ...ssively develop into complex and siloed systems with a continuous stream of point solut...
(AI_HYDRA_LEO_MISSING_COMMA)
[style] ~15-~15: ‘On top of that’ might be wordy. Consider a shorter alternative.
Context: ... and crisp data-to-insight roadmaps. On top of that, it’s a constant struggle to adhere to ...
(EN_WORDINESS_PREMIUM_ON_TOP_OF_THAT)
[uncategorized] ~25-~25: Possible missing comma found.
Context: ...rate, and maintain each one from scratch but eventually pop up completely parallel t...
(AI_HYDRA_LEO_MISSING_COMMA)
[uncategorized] ~28-~28: Do not mix variants of the same word (‘organisation’ and ‘organization’) within a single text.
Context: ...hops to achieve the data they need, the organisation feels the pressure to lift all dependen...
(EN_WORD_COHERENCY)
[uncategorized] ~28-~28: This verb may not be in the correct form. Consider using a different form for this context.
Context: ...cies clogging the central data team and distributing the workload across these domains. Ergo...
(AI_EN_LECTOR_REPLACEMENT_VERB_FORM)
[style] ~32-~32: Three successive sentences begin with the same word. Consider rewording the sentence or use a thesaurus to find a synonym.
Context: ... and embed brand-new infrastructures. * Not enough experts to help train and onboar...
(ENGLISH_WORD_REPEAT_BEGINNING_RULE)
[uncategorized] ~34-~34: Do not mix variants of the same word (‘organisation’ and ‘organization’) within a single text.
Context: ...ata stacks with not much value to show, organisations are not ideally inclined to pour in mor...
(EN_WORD_COHERENCY)
[style] ~34-~34: ‘ultimate objective’ might be wordy. Consider a shorter alternative.
Context: ...ty over Decentralisation if that is the ultimate objective. Why - Data Developer Platform https:/...
(EN_WORDINESS_PREMIUM_ULTIMATE_OBJECTIVE)
README.md
[uncategorized] ~57-~57: You might be missing the article “the” here.
Context: ...ive version control filesystem based on Git protocol for data management and public...
(AI_EN_LECTOR_MISSING_DETERMINER_THE)
[uncategorized] ~63-~63: This verb does not appear to agree with the subject. Consider using a different form.
Context: ...with code in software development, data tend not to be as precisely identified becau...
(AI_EN_LECTOR_REPLACEMENT_VERB_AGREEMENT)
[formatting] ~65-~65: If the ‘because’ clause is essential to the meaning, do not use a comma before the clause.
Context: ...c computation is not reproducible enough, because data provenance, the information of how...
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[style] ~66-~66: ‘Last but not least’ might be wordy. Consider a shorter alternative.
Context: ...lete and rarely automatically captured. Last but not least, in the absence of standardized data pa...
(EN_WORDINESS_PREMIUM_LAST_BUT_NOT_LEAST)
[style] ~77-~77: ‘new innovations’ might be wordy. Consider a shorter alternative.
Context: ...is to build data ecosystems that enable new innovations. ### Reserach Data Management JZFS i...
(EN_WORDINESS_PREMIUM_NEW_INNOVATIONS)
[style] ~82-~82: ‘with respect to’ might be wordy. Consider a shorter alternative.
Context: ...it with extend capabilities, especially with respect to managing large files. JZFS is a data m...
(EN_WORDINESS_PREMIUM_WITH_RESPECT_TO)
[uncategorized] ~101-~101: The preposition “for” seems more likely in this position.
Context: ...ure for the raw data follows the permit of performing animal experiments. Te data ...
(AI_EN_LECTOR_REPLACEMENT_PREPOSITION)
[uncategorized] ~124-~124: Did you mean “its” (the possessive pronoun)?
Context: ...Each node in the network is maintaining it's own copy, its history and coordinating ...
(ITS_PREMIUM)
[style] ~125-~125: The phrase ‘have the ability to’ might be wordy. Consider using “can”.
Context: ... a remote you trust gets corrupted, you have the ability to roll back to a previous good state and ...
(HAS_THE_ABILITY_TO)
🪛 markdownlint-cli2 (0.17.2)
docs/jzfs-spec.md
13-13: Multiple spaces after blockquote symbol
(MD027, no-multiple-space-blockquote)
README.md
13-13: Multiple spaces after blockquote symbol
(MD027, no-multiple-space-blockquote)
61-61: Images should have alternate text (alt text)
(MD045, no-alt-text)
95-95: Images should have alternate text (alt text)
(MD045, no-alt-text)
102-102: Bare URL used
(MD034, no-bare-urls)
140-140: Images should have alternate text (alt text)
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README.md
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| Project planning and experimental details are recorded in an in-house relational cloud-based database. |
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🛠️ Refactor suggestion
Add alt-text for remaining images (MD045)
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+Also applies to: 140-142
🧰 Tools
🪛 markdownlint-cli2 (0.17.2)
95-95: Images should have alternate text (alt text)
(MD045, no-alt-text)
🤖 Prompt for AI Agents
In README.md at lines 95-96 and also lines 140-142, the images lack alt-text
which is required for accessibility and markdown linting (MD045). Add
descriptive alt-text inside the square brackets for each image markdown tag to
describe the image content meaningfully.
| **JZFS** is an open-source, cloud-native version control filesystem based on Git protocol for data management and publication with a command line interface and a Python API. With JZFS, you can version control arbitrarily large data, share or consume data, record your data’s provenance, and work computationally reproducible. | ||
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| JZFS adapts principles of open-source software development and distribution to address the technical challenges of data management, data sharing, and digital provenance collection across the life cycle of digital objects. | ||
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| Compared with code in software development, data tend not to be as precisely |
There was a problem hiding this comment.
🛠️ Refactor suggestion
Provide alt-text for the joint-management image (MD045)
-
+📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| **JZFS** is an open-source, cloud-native version control filesystem based on Git protocol for data management and publication with a command line interface and a Python API. With JZFS, you can version control arbitrarily large data, share or consume data, record your data’s provenance, and work computationally reproducible. | |
| JZFS adapts principles of open-source software development and distribution to address the technical challenges of data management, data sharing, and digital provenance collection across the life cycle of digital objects. | |
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| Compared with code in software development, data tend not to be as precisely | |
| **JZFS** is an open-source, cloud-native version control filesystem based on Git protocol for data management and publication with a command line interface and a Python API. With JZFS, you can version control arbitrarily large data, share or consume data, record your data’s provenance, and work computationally reproducible. | |
| JZFS adapts principles of open-source software development and distribution to address the technical challenges of data management, data sharing, and digital provenance collection across the life cycle of digital objects. | |
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| Compared with code in software development, data tend not to be as precisely |
🧰 Tools
🪛 LanguageTool
[uncategorized] ~57-~57: You might be missing the article “the” here.
Context: ...ive version control filesystem based on Git protocol for data management and public...
(AI_EN_LECTOR_MISSING_DETERMINER_THE)
[uncategorized] ~63-~63: This verb does not appear to agree with the subject. Consider using a different form.
Context: ...with code in software development, data tend not to be as precisely identified becau...
(AI_EN_LECTOR_REPLACEMENT_VERB_AGREEMENT)
🪛 markdownlint-cli2 (0.17.2)
61-61: Images should have alternate text (alt text)
(MD045, no-alt-text)
🤖 Prompt for AI Agents
In README.md around lines 57 to 63, the image tag for
"docs/jzfs-joint-management.png" lacks alt-text, which is important for
accessibility and markdown linting. Add a descriptive alt attribute to the image
tag that briefly explains the content or purpose of the image, such as "JZFS
joint management diagram" or a similar concise description.
README.md
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| identifier, the study ID for each animal, used in a standardized fle name structure to make the data findable. | ||
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| Te directory structure for the raw data follows the permit of performing animal experiments. Te data for a | ||
| specific project is organized following the YODA principles (https://handbook.datalad.org/en/latest/basics/101-127-yoda.html), which is compatible with existing standards, e.g., the BIDS structure. | ||
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🛠️ Refactor suggestion
Correct typos and preposition
-identifier, the study ID for each animal, used in a standardized fle name structure
-The directory structure for the raw data follows the permit of performing animal experiments. Te data for a
+identifier—the study ID for each animal—used in a standardized file-name structure.
+The directory structure for the raw data follows the permit for performing animal experiments. The data for aCommittable suggestion skipped: line range outside the PR's diff.
🧰 Tools
🪛 LanguageTool
[uncategorized] ~101-~101: The preposition “for” seems more likely in this position.
Context: ...ure for the raw data follows the permit of performing animal experiments. Te data ...
(AI_EN_LECTOR_REPLACEMENT_PREPOSITION)
🪛 markdownlint-cli2 (0.17.2)
102-102: Bare URL used
(MD034, no-bare-urls)
🤖 Prompt for AI Agents
In README.md around lines 99 to 103, correct the typos "fle" to "file", "Te" to
"The", and "permit" to "permittee" or the correct intended word. Also, fix the
preposition "for performing animal experiments" to a more appropriate phrase
like "governing animal experiments" to improve clarity and correctness.
PR Type
INSERT_PR_TYPE
PR Checklist
cargo +nightly fmt).Overview
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