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pysi2mesh v0.4.2

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@fangq fangq released this 31 Jul 06:04
· 6 commits to main since this release
v0.4.2
cc7727f

pyiso2mesh - One-liner 3D Surface and Tetrahedral Mesh Generation Toolbox

Click here to register and download pyiso2mesh 0.4.2 installer

What's new compared to 0.4.0

  • 2025-07-28 [cc7727f] [feat] add jsonlab and easyh5 interfaces, bump to 0.4.2
  • 2025-07-26 [f1ebb1d] [bug] remove unneeded off file
  • 2025-07-26 [af338c1] [plot] port mcxplotvol as plotvolume, fix macos CI
  • 2025-07-25 [76b524a] [brain2mesh] accelerate brain2mesh, binsurface avoid meshcheckrepair
  • 2025-07-23 [6cb39f6] [volume] set border_value=1 to match matlab volshrink behavior
  • 2025-07-23 [f359ee5] [test] add tests for volume processing, brain1020 is working
  • 2025-07-22 [dc49d0e] [brain2mesh] initial port of brain2mesh, volume processing functions

What's new compared to 0.3.8

  • 2025-07-13 [c259973] [port] add slicesurf3, update port function table
  • 2025-07-13 [9b150ac] [test] migrate from round to assertAlmostEqual
  • 2025-07-13 [5cf18e4] [test] add tests for m2v, mesh2vol, mesh2mask, mask has bias the bias is due to matplotlib rendering under antialiased=False is sensitive to patch orders, reported at matplotlib/matplotlib#26827
  • 2025-07-13 [7650d96] [port] further debug m2v, mesh2vol, mesh2mask, edge/size are wrong
  • 2025-07-12 [1ced258] [doc] add toc to README.md
  • 2025-07-10 [935dbad] [ci] skip mac cgals2m test
  • 2025-07-10 [893aa7d] [ci] fix ci error again
  • 2025-07-10 [87a6f39] [ci] fix ci error
  • 2025-07-10 [e352af0] [ci] add test cgals2m
  • 2025-07-10 [644a909] [ci] fix broken macos test
  • 2025-07-09 [00fe9b6] [ci] relax precision to pass win2022 test
  • 2025-07-09 [b57cb08] [ci] move to windows-2022 runner as 2019 his retired
  • 2025-07-09 [fba72e4] [ci] fix failed tests
  • 2025-07-09 [15a567f] [test] add test for mergemesh

Iso2Mesh function port status

The progress of converting MATLAB-based Iso2Mesh functions to Python is
tracked in #1

Ported Unit-tested Ported Unit-tested
> All-in-one pipeline shortcuts > File I/O
✅ v2m.m ✅ tested ✅ saveasc.m ⭕️ tested
✅ v2s.m ✅ tested ✅ savedxf.m ⭕️ tested
✅ s2m.m ✅ tested ✅ savestl.m ⭕️ tested
✅ s2v.m ✅ tested ✅ savebinstl.m ⭕️ tested
✅ m2v.m ✅ tested ✅ saveinr.m ⭕️ tested
✅ sms.m ✅ tested ✅ saveoff.m ✅ tested
> Streamlined mesh generation ⭕️ savesmf.m ⭕️ tested
✅ vol2mesh.m ✅ tested ✅ savesurfpoly.m ✅ tested
✅ vol2surf.m ✅ tested ⭕️ savegts.m ⭕️ tested
✅ surf2mesh.m ✅ tested ⭕️ readgts.m ⭕️ tested
✅ surf2vol.m ✅ tested ⭕️ savemsh.m ⭕️ tested
✅ mesh2vol.m ✅ tested ⭕️ savevrml.m ⭕️ tested
> Iso2mesh main function backend ✅ readasc.m ⭕️ tested
✅ binsurface.m ✅ tested ⭕️ readinr.m ⭕️ tested
✅ cgalv2m.m ✅ tested ✅ readmedit.m ⭕️ tested
✅ cgals2m.m ✅ tested ✅ readoff.m ✅ tested
✅ vol2restrictedtri.m ✅ tested ⭕️ readsmf.m ⭕️ tested
✅ surf2volz.m ✅ tested ✅ readtetgen.m ✅ tested
✅ mesh2mask.m ✅ tested ✅ deletemeshfile.m ✅ tested
> Iso2mesh primitive meshing ✅ mcpath.m ✅ tested
✅ meshabox.m ✅ tested ✅ mwpath.m ✅ tested
✅ meshasphere.m ✅ tested ✅ savemedit.m ✅ tested
✅ meshanellip.m ✅ tested ✅ savejson.m ⭕️ tested
✅ meshunitsphere.m ✅ tested ✅ loadjson.m ⭕️ tested
✅ meshacylinder.m ✅ tested ✅ savejd.m ⭕️ tested
✅ meshgrid5.m ✅ tested ✅ loadjd.m ⭕️ tested
✅ meshgrid6.m ✅ tested ⭕️ loadmsgpack.m ⭕️ tested
✅ latticegrid.m ✅ tested ⭕️ savemsgpack.m ⭕️ tested
✅ extrudecurve.m ⭕️ tested ✅ savebj.m ⭕️ tested
✅ meshcylinders.m ✅ tested ✅ loadbj.m ⭕️ tested
> Mesh decomposition and query ⭕️ savemphtxt.m ⭕️ tested
✅ finddisconnsurf.m ✅ tested ⭕️ savetetgenele.m ⭕️ tested
✅ surfedge.m ✅ tested ⭕️ savetetgennode.m ⭕️ tested
✅ volface.m ✅ tested ⭕️ saveabaqus.m ⭕️ tested
✅ extractloops.m ✅ tested ⭕️ savenirfast.m ⭕️ tested
✅ meshconn.m ✅ tested ⭕️ readnirfast.m ⭕️ tested
✅ meshcentroid.m ✅ tested ✅ loadnifti.m ⭕️ tested
✅ nodevolume.m ✅ tested ⭕️ readmptiff.m ⭕️ tested
✅ elemvolume.m ✅ tested ⭕️ loadjsnirf.m ⭕️ tested
✅ neighborelem.m ✅ tested ⭕️ savejsnirf.m ⭕️ tested
✅ layersurf.m ⭕️ tested ⭕️ loadsnirf.m ⭕️ tested
✅ faceneighbors.m ✅ tested ⭕️ savesnirf.m ⭕️ tested
✅ edgeneighbors.m ✅ tested ⭕️ readobjmesh.m ⭕️ tested
✅ maxsurf.m ⭕️ tested ⭕️ loadjmesh.m ⭕️ tested
✅ flatsegment.m ⭕️ tested ⭕️ readobjmesh.m ⭕️ tested
✅ orderloopedge.m ⭕️ tested > Volumetric image pre-processing
✅ mesheuler.m ✅ tested ✅ volgrow.m ✅ tested
✅ bbxflatsegment.m ⭕️ tested ✅ volshrink.m ✅ tested
✅ surfplane.m ⭕️ tested ✅ volopen.m ✅ tested
✅ surfinterior.m ⭕️ tested ✅ volclose.m ✅ tested
✅ surfpart.m ⭕️ tested ✅ fillholes3d.m ✅ tested
✅ surfseeds.m ⭕️ tested ⭕️ bwislands.m ⭕️ tested
✅ meshquality.m ✅ tested ⭕️ laplacefill.m ⭕️ tested
✅ meshedge.m ✅ tested ⭕️ deislands2d.m ⭕️ tested
✅ meshface.m ✅ tested ⭕️ deislands3d.m ⭕️ tested
✅ surfacenorm.m ✅ tested ⭕️ ndgaussian.m ⭕️ tested
✅ nodesurfnorm.m ✅ tested ⭕️ ndimfilter.m ⭕️ tested
✅ uniqedges.m ✅ tested ⭕️ imedge3d.m ⭕️ tested
✅ uniqfaces.m ✅ tested ⭕️ internalpoint.m ⭕️ tested
✅ advancefront.m ⭕️ tested ⭕️ smoothbinvol.m ⭕️ tested
✅ innersurf.m ⭕️ tested ✅ thickenbinvol.m ✅ tested
✅ outersurf.m ⭕️ tested ✅ thinbinvol.m ✅ tested
✅ surfvolume.m ✅ tested ⭕️ maskdist.m ⭕️ tested
✅ insurface.m ✅ tested > Mesh plotting
> Mesh processing and reparing ✅ plotmesh.m ✅ tested
✅ meshcheckrepair.m ✅ tested ✅ plotsurf.m ✅ tested
✅ meshreorient.m ✅ tested ✅ plottetra.m ✅ tested
✅ removedupelem.m ✅ tested ✅ plotedges.m ✅ tested
✅ removedupnodes.m ✅ tested ✅ qmeshcut.m ✅ tested
✅ removeisolatednode.m ✅ tested > Miscellaneous functions
✅ removeisolatedsurf.m ⭕️ tested ⭕️ surfdiffuse.m ⭕️ tested
✅ surfaceclean.m ⭕️ tested ⭕️ volmap2mesh.m ⭕️ tested
✅ getintersecttri.m ⭕️ tested ⭕️ isoctavemesh.m ⭕️ tested
✅ delendelem.m ⭕️ tested ⭕️ getvarfrom.m ⭕️ tested
✅ surfreorient.m ✅ tested ✅ raytrace.m ✅ tested
> Mesh registration ⭕️ linextriangle.m ⭕️ tested
✅ proj2mesh.m ⭕️ tested ⭕️ getplanefrom3pt.m ⭕️ tested
✅ dist2surf.m ⭕️ tested ✅ getexeext.m ✅ tested
✅ regpt2surf.m ⭕️ tested ✅ fallbackexeext.m ✅ tested
✅ affinemap.m ⭕️ tested ⭕️ iso2meshver.m ⭕️ tested
> Polyline handling ⭕️ raysurf.m ⭕️ tested
✅ slicesurf.m ⭕️ tested ⭕️ getoptkey.m ⭕️ tested
✅ slicesurf3.m ⭕️ tested ✅ rotatevec3d.m ⭕️ tested
✅ polylinelen.m ⭕️ tested ✅ rotmat2vec.m ⭕️ tested
✅ polylinesimplify.m ⭕️ tested ✅ varargin2struct.m ⭕️ tested
✅ polylineinterp.m ⭕️ tested ✅ jsonopt.m ⭕️ tested
✅ closestnode.m ⭕️ tested ⭕️ mergestruct.m ⭕️ tested
> Mesh resampling and optimization ⭕️ orthdisk.m ⭕️ tested
✅ meshresample.m ✅ tested ⭕️ nestbracket2dim.m ⭕️ tested
✅ remeshsurf.m ✅ tested ✅ memmapstream.m ⭕️ tested
✅ smoothsurf.m ✅ tested ⭕️ aos2soa.m ⭕️ tested
✅ sortmesh.m ⭕️ tested ⭕️ soa2aos.m ⭕️ tested
✅ mergemesh.m ✅ tested > Brain2mesh toolbox
✅ meshrefine.m ✅ tested ✅ brain2mesh.m ⭕️ tested
✅ mergesurf.m ⭕️ tested ✅ brain1020.m ⭕️ tested
✅ surfboolean.m ✅ tested ✅ intriangulation.m ⭕️ tested
✅ fillsurf.m ⭕️ tested ✅ label2tpm.m ⭕️ tested
✅ highordertet.m ✅ tested ✅ tpm2label.m ⭕️ tested
✅ elemfacecenter.m ✅ tested > JSONLab toolbox
✅ barydualmesh.m ✅ tested ✅ jdataencode.m ⭕️ tested
✅ meshinterp.m ⭕️ tested ✅ jdatadecode.m ⭕️ tested
✅ meshremap.m ⭕️ tested ✅ jsonpath.m ⭕️ tested
✅ extrudesurf.m ⭕️ tested ✅ jdlink.m ⭕️ tested
Assets 2
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