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Adding the Drug-Target Interaction dataset from https://tdcommons.ai/multi_pred_tasks/dti/. The task is to predict binding affinity given the target amino acid/compound SMILES string.

Cody Jackson and others added 27 commits March 11, 2023 11:45
* Add `uris` field for identifiers

* Linting

* update valdation

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* feat: fix typo

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Co-authored-by: Matthew Evans <git@ml-evs.science>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Michael Pieler <Michael.Pieler@Gmail.com>
Co-authored-by: Kevin M Jablonka <32935233+kjappelbaum@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
…ranch

fix: add `main` branch for submodule
* Add `uris` field for identifiers

* Linting

* update valdation

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* feat: fix typo

---------

Co-authored-by: Matthew Evans <git@ml-evs.science>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Michael Pieler <Michael.Pieler@Gmail.com>
…ript

feat: add cluster conda environment script
@kjappelbaum kjappelbaum linked an issue Mar 15, 2023 that may be closed by this pull request
kjappelbaum and others added 26 commits March 26, 2023 17:34
)

* docs: update contribution guide to reflect schema changes

* feat: add rxnsmiles as identifier
…beyj/chemnlp into Add-Drug-Target-Interaction-dataset
@MicPie
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MicPie commented Mar 28, 2023

Still needs discussion:
#100 (comment)
#100 (comment)
#100 (comment)

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New Task: Add Drug-Target Interaction data

6 participants