COHD API Monitoring Workflow #2391
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| # This workflow periodically makes calls to the COHD API to verify it's operating as expected | |
| name: COHD API Monitoring Workflow | |
| on: | |
| # Schedule this workflow to run twice a day (at 0300 and 1500 UTC) | |
| schedule: | |
| - cron: '0 15 * * *' | |
| # Also allow manually triggering this workflow_dispatch: | |
| workflow_dispatch: | |
| jobs: | |
| monitor: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11.x | |
| - name: Install dependencies | |
| id: dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest requests pandas matplotlib linkml-runtime bmt reasoner-validator>=4.0.0 flask flask-cors flask-caching | |
| pip show reasoner-validator | |
| # Run /health checks on all COHD instances (dev, CI, Test, Prod) | |
| - name: Test all COHD instances alive | |
| if: success() || (failure() && steps.dependencies.conclusion == 'success') # Run even if other tests fail | |
| # pytest -s disables pytest from capturing print statements (i.e., print statements will appear in console) | |
| run: | | |
| pytest -s test_alive.py | |
| # Test cohd.io by running pytest on test_cohd_io.py | |
| - name: Test COHD REST API | |
| if: success() || (failure() && steps.dependencies.conclusion == 'success') # Run even if other tests fail | |
| run: | | |
| pytest -s test_cohd_io.py | |
| # Test COHD TRAPI endpoints by running pytest on test_cohd_trapi.py | |
| - name: Test COHD TRAPI | |
| if: success() || (failure() && steps.dependencies.conclusion == 'success') # Run even if other tests fail | |
| run: | | |
| pytest -s test_cohd_trapi.py | |
| # Test covid.cohd.io by running pytest on test_cohd_covid_io.py | |
| - name: Test covid.cohd.io | |
| if: success() || (failure() && steps.dependencies.conclusion == 'success') # Run even if other tests fail | |
| run: | | |
| pytest -s test_cohd_covid_io.py |