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BEDApub

Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel

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besca besca Public

BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

Python 50 17
splicekit splicekit Public

splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

Python 17 4
designit designit Public

Blocking and randomization for experimental design

HTML 8 1
besca_publication_results besca_publication_results Public

Jupyter Notebook 4 1
space-microbe space-microbe Public

Python 4
bescape bescape Public

BESCApe is a cell deconvolution package.

HTML 3 1

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Showing 10 of 50 repositories

besca Public
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

bedapub/besca’s past year of commit activity

Python 50 GPL-3.0 17 30 (1 issue needs help) 4 Updated May 30, 2025
PMDA-Summer-School Public Forked from LuisaMohr/PMDA-Summer-School
Public website of Roche PMDA Summer School

bedapub/PMDA-Summer-School’s past year of commit activity

2 GPL-3.0 3 0 0 Updated May 21, 2025
fm_Fg_prediction Public

bedapub/fm_Fg_prediction’s past year of commit activity

R 0 0 0 0 Updated Mar 27, 2025
ribiosUtils Public
The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery

bedapub/ribiosUtils’s past year of commit activity

C 0 1 1 0 Updated Mar 25, 2025
splicekit Public
splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

bedapub/splicekit’s past year of commit activity

Python 17 GPL-3.0 4 3 0 Updated Mar 20, 2025
bksnake Public
Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow

bedapub/bksnake’s past year of commit activity

Python 2 0 0 0 Updated Feb 28, 2025
ribiosNGS Public
Next-generation sequencing data analysis with ribios

bedapub/ribiosNGS’s past year of commit activity

R 2 2 5 0 Updated Feb 6, 2025
ribiosAnnotation Public
Annotate features (genes, mRNAs, proteins, ...) with ribios

bedapub/ribiosAnnotation’s past year of commit activity

R 0 1 2 0 Updated Feb 3, 2025
ribiosExpression Public
Data structure and functions for gene expression analysis

bedapub/ribiosExpression’s past year of commit activity

R 0 1 1 0 Updated Jan 31, 2025
TCBinducedTMEreprogramming_CEATCBMC38_scRNAseq_publication- Public
Notebooks used to produce results for the publication "Tumor Microenvironment Reprogramming Induced by T Cell Engager Treatment" related to the in vivo CEA-TCB MC38-huCEA data.

bedapub/TCBinducedTMEreprogramming_CEATCBMC38_scRNAseq_publication-’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jan 16, 2025

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