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remove reference to undefined metadata attributes #20

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remove reference to undefined metadata attributes #20

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5 changes: 1 addition & 4 deletions pipelines/chipseq.py
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Original file line number Diff line number Diff line change
Expand Up @@ -54,10 +54,7 @@ def __init__(self, series):
# This is a workaround to calling the parent's class set_file_paths
# which is impossible if the sample's YAML file does not contain
# pointers to its project (as is the case after looper submission)
self.paths.sample_root = os.path.join(
self.prj['metadata']['output_dir'],
self.prj['metadata']['results_subdir'],
self.name)
self.paths.sample_root = series['paths']['sample_root']

# Set broad/histone status that may later be modified given
# context of a pipeline configuration file, handling null/missing mark.
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