Discussions

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  Running metaGEM with preprocessed data

  AryLech asked May 8, 2025 in Q&A · Unanswered

  

  

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  ORF annotated protein fasta files

  trbella asked May 6, 2025 in Q&A · Unanswered

  

  

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  Trouble finding a suitable media for model simulation

  shikidj16 started Apr 1, 2025 in General

  

  

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  Is it common that only about 30 MAGs of high quality were obtained from one metagenome sample?

  hongzhonglu asked Apr 9, 2021 in Q&A · Answered

  

  

  

  

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  eukCC in metaGEM

  ycsong started Mar 20, 2024 in General

  

  

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  gtdbtk throws memory allocation error

  question Further information is requested

  ycsong asked Feb 19, 2024 in Q&A · Answered

  

  

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  visualizing interleaved QC data

  question Further information is requested

  ycsong asked Feb 2, 2024 in Q&A · Closed · Answered

  

  

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  metabat won't execute successfully

  ycsong asked Jan 28, 2024 in Q&A · Closed · Answered

  

  

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  Sbatch fails due to parameters not being provided (though they are)

  ycsong asked Jan 15, 2024 in Q&A · Answered

  

  

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  config.yaml not found or is it found?

  ycsong asked Jan 11, 2024 in Q&A · Closed · Answered

  

  

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  Long Reads!

  question Further information is requested

  aljazdzy asked Jan 12, 2024 in Q&A · Answered

  

  

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  having issues setting up metagem environment

  ycsong asked Dec 1, 2023 in Q&A · Answered

  

  

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  Regarding usage, installing CPLEX & CarveMe

  ShailNair asked Jan 4, 2021 in Q&A · Answered

  

  

  

  

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  Installing Snakemake for metaWrap Environment?

  question Further information is requested

  tanio003 asked Mar 18, 2022 in Q&A · Answered

  

  

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  Running metaGEM.sh parser locally

  question Further information is requested

  karinedurand asked Mar 3, 2021 in Q&A · Answered

  

  

  

  

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  How to run on a cluster without workload manager

  question Further information is requested

  slambrechts asked May 22, 2021 in Q&A · Answered

  

  

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  [Question] Option to filter host's DNA

  matrs asked Apr 21, 2021 in Q&A · Answered

  

  

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  Question about generating "depth.txt" for metabat2

  hongzhonglu asked Mar 21, 2021 in Q&A · Answered

  

  

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  Have you metadata for the GEMs from gut

  question Further information is requested

  hongzhonglu asked Mar 2, 2021 in Q&A · Answered

  

  

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  why use gap filling with carveme

  vrmarcelino asked Feb 7, 2021 in Q&A · Answered

  

  

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