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@scorreard scorreard commented May 28, 2025

The codex training was limited, in order to better guide communities, we created a learning pathway.

Parts of the tuto (include the workflow and tuto tables in the community page) will have to be updated after the All Hands

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@bebatut bebatut left a comment

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Amazing! Thanks a lot @scorreard!!!
I put some comments. My main one would be to remove the community-codex tutorial so now as I am not sure it works how it is

> 4. Select **Create a new file**
> 5. Fill in the `Name of your file` field with: name of your community + `/metadata/`
> This will create a folder for your community and a new folder for your community called metadata.
> 6. Click on **Commit changes**
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Committing a folder without files in it does not work I think.
One idea: Put the hands-on part until there as a FAQ and add a step "Add your community to the Galaxy CoDex" as a first step for tools, workflows, tutorials.
I would then remove this tutorial.

What do you think?

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I moved the hands on part in each tutorial (tools, workflow and tutorials) as the file to create is different each time (and as you said, it's not possible to just create a empty folder). What do you think?
I added a FAQ about "What is a codex" which was the hands-off part of this tutorial

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I feel like we should add a section about reviewing the tools in tool_status.tsv file after. Do you think you could add it?

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Are you talking about tools or tutorials?

scorreard and others added 3 commits May 28, 2025 16:55
Co-authored-by: Bérénice Batut <berenice.batut@gmail.com>
Co-authored-by: Bérénice Batut <berenice.batut@gmail.com>
Added Keiler to the contributor list
@scorreard scorreard marked this pull request as draft August 27, 2025 14:03
@scorreard scorreard marked this pull request as ready for review August 27, 2025 15:43
shiltemann and others added 3 commits September 17, 2025 10:45
Co-authored-by: Solenne Correard <54953390+scorreard@users.noreply.github.com>
Co-authored-by: Solenne Correard <54953390+scorreard@users.noreply.github.com>
Co-authored-by: Solenne Correard <54953390+scorreard@users.noreply.github.com>
shiltemann
shiltemann previously approved these changes Sep 17, 2025
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looks good to me! I added support for proper bibtex references, let's get this in and you can add further optimizations later :) Thanks @scorreard @bebatut and @BirdmanRidesAgain!

@shiltemann shiltemann merged commit cd754cd into galaxyproject:main Sep 17, 2025
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@scorreard scorreard deleted the update_codex_training branch September 17, 2025 11:00
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4 participants