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Pull requests: nf-core/modules

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Pull requests list

Migrate somalier/ancestry to nf-test nf-test
#8496 opened May 16, 2025 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
Fix repeatmasker bug
#8495 opened May 16, 2025 by BioWilko Loading…
17 tasks
2
Add VisiumHD tests to SpaceRanger
#8494 opened May 16, 2025 by cavenel Loading…
New module: ANTISMASH_ANTISMASH and ANTISMASH_DOWNLOADDATABASES
#8493 opened May 16, 2025 by jfy133 • Draft
Add nextdenovo to nf-core modules.
#8492 opened May 16, 2025 by elmedjadjirayane Loading…
5 of 17 tasks
3
Sanitized fasta before passing to av_screen to avoid permanentFail Ready for Review
#8489 opened May 16, 2025 by GallVp Loading…
1 of 17 tasks
Added fa-lint Ready for Review
#8488 opened May 16, 2025 by GallVp Loading…
10 of 17 tasks
1
Also compute ungapped percent identity scores in last/split.
#8487 opened May 16, 2025 by charles-plessy Loading…
17 tasks done
Swap scramble/clusteranalysis to nf-test
#8486 opened May 15, 2025 by SPPearce Loading…
Swap varlociraptor/callvariants to nf-test
#8485 opened May 15, 2025 by SPPearce Loading…
nf-test migration for universc nf-test
#8478 opened May 14, 2025 by hyunhwan-jeong Loading…
17 tasks
1
@hyunhwan-jeong
fix: use >| instead of >
#8476 opened May 14, 2025 by znorgaard Loading…
1 of 8 tasks
1
1
Added module lmm and copied kinshipmatrix module
#8475 opened May 14, 2025 by KevinMLanderos Loading…
17 tasks
2
nf-test migration for purgedups/purgedups nf-test
#8473 opened May 14, 2025 by hyunhwan-jeong Loading…
17 tasks
1
@hyunhwan-jeong
migrate nf-test for purgedups/histplot. nf-test
#8472 opened May 14, 2025 by hyunhwan-jeong Loading…
17 tasks
1
@hyunhwan-jeong
purgedups/getseq nftest migration nf-test
#8471 opened May 14, 2025 by hyunhwan-jeong Loading…
17 tasks
@hyunhwan-jeong
1
Gemma kinshipmatrix
#8468 opened May 14, 2025 by chriswyatt1 Loading…
12 tasks done
1
2
migrate ultra/index to nf-test #7713 nf-test Ready for Review
#8467 opened May 14, 2025 by jgmedinaf Loading…
1 of 17 tasks
1
1
Draft: Nftest migration metaphlan3
#8466 opened May 14, 2025 by nsang0u Loading…
1
@maxulysse
15
nf-test migration for ultra/align #7712 nf-test
#8465 opened May 14, 2025 by jgmedinaf Loading…
3 of 17 tasks
1
1
updated dragonflye to 1.2.1
#8462 opened May 14, 2025 by MessyaszA Loading…
1 task
1
nf-test: migrate cellrangeratac/mkfastq tests (#7547) nf-test
#8459 opened May 14, 2025 by hyunhwan-jeong Loading…
17 tasks
1
@hyunhwan-jeong
10
shellcheck: Run on .nf scripts
#8433 opened May 10, 2025 by zeehio Loading…
2 of 17 tasks
4
feat: add formula and contrasts to limma
#8429 opened May 9, 2025 by atrigila • Draft
17 tasks
5
Update to fcs version and tests
#8418 opened May 8, 2025 by DLBPointon Loading…
@DLBPointon
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