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Pull requests: nf-core/modules

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Pull requests list

corrected
#9131 opened Sep 24, 2025 by vagkaratzas Loading…
5 of 17 tasks
Update deeptools modules: bamcoverage, multibamsummary, multibigwigsummary
#9129 opened Sep 24, 2025 by nadiaxaidan Loading…
9 of 22 tasks
1
add pbtk/pbmerge module new module Adding a new module
#9127 opened Sep 23, 2025 by HaidYi Loading…
12 of 17 tasks
1
@HaidYi
2
new module: fibertools-rs new module Adding a new module
#9102 opened Sep 18, 2025 by YiJin-Xiong Loading…
11 of 17 tasks
1
@YiJin-Xiong
37
filter differential genes now outputs up and down regulated genes as well
#9094 opened Sep 18, 2025 by akaviaLab Loading…
8 tasks done
feat: Integrate wave_singularity.py script for Singularity container HTTPS SIF URL reporting
#9079 opened Sep 16, 2025 by Copilot AI • Draft
@edmundmiller @Copilot
new module: modkit/repair new module Adding a new module
#9077 opened Sep 16, 2025 by jkh00 Loading…
10 of 17 tasks
@jkh00
11
New fasta index
#9067 opened Sep 15, 2025 by eduard-watchmaker Loading…
17 tasks
5
Parabricks STAR (and stargenomegenerate old version for compatibility)
#9062 opened Sep 15, 2025 by gburnett-nvidia Loading…
7 of 17 tasks
85
Update meta.yml
#9060 opened Sep 15, 2025 by lucacozzuto Loading…
1 of 17 tasks
7918 pharokka update stub
#9055 opened Sep 13, 2025 by shivangi-7 • Draft
1
Gzi input for mutect2
#9043 opened Sep 11, 2025 by apetizerr Loading…
2 tasks
1
25
Deacon filter and update deacon index
#9034 opened Sep 11, 2025 by sofstam Loading…
8 of 17 tasks
2
Fixing bismark stubs and updating tests
#9008 opened Sep 5, 2025 by paddyharker1005 Loading…
@paddyharker1005
2
Update CELLRANGER_MKREF
#9007 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
1
Update CELLRANGER_MKGTF
#9006 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
9
feat: samclip module new module Adding a new module Ready for Review
#8999 opened Sep 4, 2025 by emmcauley Loading…
13 of 17 tasks
1
12
Adds new Devcontainer Setup for use with Codespaces
#8983 opened Sep 2, 2025 by JulianFlesch Loading…
17 tasks
1
@JulianFlesch
First pass at POC for topics update for bwamem2 and dependencies
#8978 opened Sep 1, 2025 by maxulysse • Draft
17 tasks
2
Add slamdunk/map module new module Adding a new module
#8967 opened Aug 28, 2025 by HaidYi Loading…
12 of 17 tasks
@HaidYi
9
Swap fasta_index_dna to nf-test - removing all remnants of pytests
#8962 opened Aug 27, 2025 by SPPearce Loading…
17 tasks
LINKS: Fix thread limit
#8958 opened Aug 27, 2025 by nschan Loading…
1
Example git repo with pip: in an environment
#8954 opened Aug 26, 2025 by edmundmiller Loading…
@edmundmiller
Update wipertools/fastqgather enhancement New feature or request Ready for Review
#8931 opened Aug 20, 2025 by mazzalab Loading…
1 of 17 tasks
12
WIP: Use a non-mutable reference for tools
#8926 opened Aug 20, 2025 by maxulysse Loading…
17 tasks
ProTip! What’s not been updated in a month: updated:<2025-08-24.