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Pull requests: nf-core/modules

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Pull requests list

bump spaceranger to 10.0.0 and base image to debian 24.1.2-0
#9410 opened Nov 14, 2025 by mashehu Loading…
1
2
Add the topics section to the meta-schema.json
#9409 opened Nov 14, 2025 by mirpedrol Loading…
1
Add genetic map to STITCH module
#9408 opened Nov 14, 2025 by LouisLeNezet Loading…
6 of 17 tasks
Refactor read assignment logic for clarity
#9400 opened Nov 13, 2025 by nvnieuwk Loading…
Fix issues in chromograph module
#9395 opened Nov 12, 2025 by fellen31 Loading…
17 tasks
4
New module: sambamba/depth
#9393 opened Nov 12, 2025 by peterpru • Draft
11 of 17 tasks
1
@peterpru
Updare fgbio/copyumifromreadname
#9373 opened Nov 10, 2025 by SPPearce • Draft
Add module: TRIDENT_FETCH
#9360 opened Nov 7, 2025 by TCLamnidis Loading…
4 of 20 tasks
5
Vcf vembrane
#9345 opened Nov 5, 2025 by dhtt • Draft
12 of 17 tasks
@dhtt
1
Vembrane filter
#9340 opened Nov 5, 2025 by dhtt Loading…
12 of 17 tasks
@mkatsanto @dhtt @trangdo-hsc
12
Use tar --no-same-owner option for untar module
#9338 opened Nov 4, 2025 by nathanweeks Loading…
2 of 17 tasks
1
Merge modules with new topics syntax
#9333 opened Nov 3, 2025 by mashehu Loading…
2
Add fq2bam fq align dd bwamem
#9309 opened Oct 30, 2025 by eduard-watchmaker Loading…
17 tasks
46
Restructuring how symlinks work to avoid conflicts with file permissions
#9308 opened Oct 30, 2025 by gburnett-nvidia Loading…
8 of 17 tasks
1
fix: gprofiler2 output files missing gene names in intersection columns #497 good first issue Good for newcomers
#9304 opened Oct 29, 2025 by mohe1linux Loading…
@mohe1linux
Prior cons buildpriors [DRAFT]
#9300 opened Oct 29, 2025 by zhliUU Loading…
1 of 3 tasks
2
Add priorcons module [DRAFT]
#9299 opened Oct 29, 2025 by GERMAN00VP Loading…
12 of 17 tasks
feat: addition of vembrane sort module
#9294 opened Oct 29, 2025 by mkatsanto Loading…
12 of 13 tasks
1
@mkatsanto @trangdo-hsc
18
Add nf-co2footprint plugin for emissions tracking
#9293 opened Oct 29, 2025 by edmundmiller Loading…
4 tasks
1
@edmundmiller
5
Add stub tests to kraken2/kraken2 nf-core module
#9289 opened Oct 29, 2025 by fischer-hub Loading…
11 of 17 tasks
1
trim_galore version
#9276 opened Oct 28, 2025 by yadavbha Loading…
17 tasks
4
update module: vcf2zarr/convert
#9270 opened Oct 28, 2025 by camlloyd Loading…
2 of 17 tasks
1
2
🔧 update image and bioconda container for VueGen to latest version
#9201 opened Oct 16, 2025 by enryH Loading…
21
EBI MGnify - ENA Genome uploader
#9177 opened Oct 8, 2025 by mberacochea • Draft
17 tasks
15
adding homer merge peaks, and a peakcalling workflow
#9172 opened Oct 5, 2025 by cmatKhan Loading…
4
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