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fastq_dir cannot be a symlink

bugSomething isn't workingSomething isn't working

Status: Open.

#124 In nf-core/spatialvi;

· nathanweeks opened on Oct 10, 2025

Input file name collision

bugSomething isn't workingSomething isn't working

Status: Open.

#121 In nf-core/spatialvi;

· vella12-osu opened on Sep 17, 2025

Update the metro map

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#119 In nf-core/spatialvi;

· fasterius opened on Sep 5, 2025

No <code>fastq_dir</code> specified or no samples found in folder. Output into S3//

bugSomething isn't workingSomething isn't working

Status: Open.

#107 In nf-core/spatialvi;

· LucFrancisENX opened on Feb 17, 2025

Copying <code>sdata_processed.zarr</code> to S3 yields java.nio.file.NoSuchFileException

bugSomething isn't workingSomething isn't working

Status: Open.

#94 In nf-core/spatialvi;

· R3myG opened on Nov 4, 2024

Full-size test dataset

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#48 In nf-core/spatialvi;

· grst opened on Jun 15, 2023