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MTBseq_source
MTBseq_source PublicMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…
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SMaltophilia_phylo
SMaltophilia_phylo PublicScripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper
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SARSCOV2seq
SARSCOV2seq PublicPipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data
Perl
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- MTBseq_source Public
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
ngs-fzb/MTBseq_source’s past year of commit activity - NTMtools Public
This repository contains scripts and manuals for whole genome sequencing based analysis of Non-tuberculous mycobacteria. Questions? Ask mdiricks@fz-borstel.de
ngs-fzb/NTMtools’s past year of commit activity - HaemoSeq Public
A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.
ngs-fzb/HaemoSeq’s past year of commit activity - binoSNP Public
🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains
ngs-fzb/binoSNP’s past year of commit activity - SMaltophilia_phylo Public
Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper
ngs-fzb/SMaltophilia_phylo’s past year of commit activity
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