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ENH: Implement BIDS X5 io module #240

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ENH: Implement BIDS X5 io module #240

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oesteban
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Building on top of #213, this PR adds a baseline implementation for BIDS' X5.

@sgiavasis, @jmarabotto: I tried to cherry-pick everything you did within the other PR, and pushed your branch for reference to the upstream repository. In a second pass after this PR, I want to review how much from outside nitransforms.io needs to be picked up back.

Julien Marabotto and others added 9 commits July 16, 2025 16:37
(cherry picked from commit 49bf4c3)
(cherry picked from commit 74090ac)
(cherry picked from commit ba8a389)
(cherry picked from commit e4e3f44)
…s to the future. Started the beginning of some xfm_utils for quicker testing and validation.

(cherry picked from commit 7ba96c3)
(cherry picked from commit 0e213cb)
(cherry picked from commit 3d263bb)
(cherry picked from commit a102f1e)
(cherry picked from commit e465332)
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codecov bot commented Jul 16, 2025

Codecov Report

Attention: Patch coverage is 0% with 17 lines in your changes missing coverage. Please review.

Project coverage is 0.00%. Comparing base (eff0b71) to head (b008d88).

Files with missing lines Patch % Lines
nitransforms/io/x5.py 0.00% 16 Missing ⚠️
nitransforms/io/__init__.py 0.00% 1 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (eff0b71) and HEAD (b008d88). Click for more details.

HEAD has 425 uploads less than BASE
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424 1
unittests 2 0
Additional details and impacted files
@@            Coverage Diff             @@
##           master    #240       +/-   ##
==========================================
- Coverage   95.38%   0.00%   -95.39%     
==========================================
  Files          28      29        +1     
  Lines        2948    2963       +15     
==========================================
- Hits         2812       0     -2812     
- Misses        136    2963     +2827     
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@oesteban
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Closing in favor of #241

@oesteban oesteban closed this Jul 17, 2025
@oesteban oesteban deleted the enh/x5-io branch July 18, 2025 17:06
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2 participants