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Update GIN #87

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45 changes: 45 additions & 0 deletions causallearn/search/HiddenCausal/GIN/FisherTest.py
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Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
#-------------------------------------------------------------------------------
# Name: 模块1
# Purpose:
#
# Author: YY
#
# Created: 03/03/2021
# Copyright: (c) YY 2021
# Licence: <your licence>
#-------------------------------------------------------------------------------
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We should delete this, or fill it.

In the open-source code, we should maintain high code quality --- we shouldn't allow any unnecessary comments in the code.

Sorry there are lots of rules in industry code that are different from research code :(

import math
from scipy.stats import chi2

def FisherTest(pvals,alph=0.01):
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nit: comma between different variables.

You can follow Google Python codestyle when writing code: https://google.github.io/styleguide/pyguide.html

You can find automated tool like pylint in the link.

Suggested change
def FisherTest(pvals,alph=0.01):
def FisherTest(pvals, alph=0.01):

Fisher_Stat=0
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space between operand

Suggested change
Fisher_Stat=0
Fisher_Stat = 0

L = len(pvals)
for i in range(0,L):
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Suggested change
for i in range(0,L):
for i in range(0, L):

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address this?

if pvals[i] ==0:
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Suggested change
if pvals[i] ==0:
if pvals[i] == 0:

TP = 1e-05
else:
TP = pvals[i]

Fisher_Stat = Fisher_Stat-2*math.log(TP)
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Suggested change
Fisher_Stat = Fisher_Stat-2*math.log(TP)
Fisher_Stat = Fisher_Stat - 2 * math.log(TP)



Fisher_pval = 1-chi2.cdf(Fisher_Stat, 2*L) #自由度2*L
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same


#print(Fisher_pval)
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remove this


if Fisher_pval >alph:
return True,Fisher_pval
else:
return False,Fisher_pval
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Suggested change
if Fisher_pval >alph:
return True,Fisher_pval
else:
return False,Fisher_pval
return Fisher_pval > alph, Fisher_pval







def main():
pvals = [0.01,0.9]
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Suggested change
pvals = [0.01,0.9]
pvals = [0.01, 0.9]

FisherTest(pvals,0.1)
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Suggested change
FisherTest(pvals,0.1)
FisherTest(pvals, 0.1)


if __name__ == '__main__':
main()
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