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@rki-mf1

RKI MF1 Bioinformatics

Bioinformatics code of MF1

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  1. clean clean Public

    A nextflow pipeline for decontamination of short reads, long reads and contigs

    Nextflow 46 5

  2. breakfast breakfast Public

    breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).

    Python 10 1

  3. covsonar covsonar Public

    A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

    Python 6

  4. cievad cievad Public

    A tool suite for a simple, streamlined and rapid evaluation of variant callsets

    Nextflow 6 1

  5. viruswarn-sc2 viruswarn-sc2 Public

    VirusWarn-SC2 is a simple Variants of concern aLert system script for Sars-CoV2. Doc https://rki-mf1.github.io/vocal-doc/

    HTML 5 1

  6. FluPipe FluPipe Public

    Influenza genome reconstruction

    Python 5 1

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