v2.4.12

webknossos

Changed

• Disabled conditional writes for S3 buckets in tensorstore. #1368

Fixed

• Fixed that some operations that need an authentication token didn’t ask for it but just failed. #1366

v2.4.11

webknossos

Breaking Changes

• All internal API client methods (webknossos.client) use keyword-only arguments. #1363
• The signature of Dataset.trigger_reload_on_datastore changed. dataset_name has been renamed to dataset_name_or_url. Alternatively, a dataset_id can be supplied. #1363

Changed

• Layer.add_mag_as_copy now automatically uses file-based copy, if possible. Therefore, Dataset.fs_copy_dataset, Dataset.add_fs_copy_layer and Layer.add_fs_copy_mag are deprecated. #1362
• The API methods now use v10 API version of Webknossos. Datasets are now referenced by ID instead of dataset name or directory name. #1363

v2.4.10

webknossos

Added

• Added support for remote datasets and annotations to webknossos export-as-tiff. #1356

v2.4.9

webknossos

Fixed

• Fixed a bug where paths of references mags were wrong, if the target dataset's path was a prefix of the source dataset's path. #1346

v2.4.8

webknossos

Added

• Added support for reading wkw datasets with the new "mag" key in datasource-properties.json, which replaces "wkwResolutions" for datasets written out by the webknossos server. #1349

v2.4.7

webknossos

Added

• Added MagView.rechunk methods to allow for rechunking of datasets. #1342
• Added the option to configure the codecs of Zarr3 datasets. Supply a Zarr3Config to the compress argument in Layer.add_mag or similar methods. codecs and chunk_key_encoding can be customized. #1343
• Added method download_mesh to the RemoteDataset and RemoteAnnotation classes to allow download of .stl files. #1307

Changed

• Enforces that chunk_shape and shard_shape have power-of-two values. This assumptions was used in the code previously, but not explicitly enforced. #1342
• The sharding_indexed codec is no longer used if chunk_shape == shard_shape. #1343

v2.4.6

Release for v2.4.6

v2.4.5

webknossos

Fixed

• Fixed an issue where the unit of the scale (voxel_size) was not considered when reading the NML. #1339

cluster_tools

Fixed

• Fixed that sometimes not all slurm jobs were canceled when an executor was killed. #1317
• Fixed that when multiple cluster executors were instantiated in the same process, the original SIGINT handler sometimes was no longer called, leading to the main application not shutting down correctly after a SIGINT signal. #1317

v2.4.4

webknossos

Added

• The function Dataset.announce_manual_upload now takes an additional optional parameter dataset_url to select the correct datastore in a multi-datastore setup. #1336

Changed

• Every file that sends logging messages has its own logger now. This can be used to selectively disable loggers. #1335

v2.4.3

webknossos

Changed

• Warnings regarding missing pims image readers are only printed once during conversion. Error messages regarding wk-libs version are not displayed in slurm environments. #1266

Fixed

• Fixed mag and attachment paths under Windows. #1329